miRNA display CGI


Results 21 - 40 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 100331 0.76 0.356169
Target:  5'- gGCCCuCGAGcggGCCGCCGCGgGCGAgGCg -3'
miRNA:   3'- gCGGG-GCUC---UGGUGGUGUgUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 52593 0.77 0.340723
Target:  5'- gGCCCCGAGGCCguacGCCACGgGCcgccucagccaGGCGCa -3'
miRNA:   3'- gCGGGGCUCUGG----UGGUGUgUG-----------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27688 0.8 0.229153
Target:  5'- uGCCgCCGGGGCCcaGCCACACGcCGGCGCc -3'
miRNA:   3'- gCGG-GGCUCUGG--UGGUGUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 11289 0.83 0.138982
Target:  5'- aCGCCCaCGAGGCgCGCCGCGCGgGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUG-GUGGUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 19007 0.76 0.388512
Target:  5'- cCGCCUCGaAGAUCACCAgGC-CGGCGCu -3'
miRNA:   3'- -GCGGGGC-UCUGGUGGUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 25867 0.76 0.372101
Target:  5'- gCGCCCCGAcGGCCGCgAgGC-CGACGCc -3'
miRNA:   3'- -GCGGGGCU-CUGGUGgUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 54696 0.77 0.333183
Target:  5'- gGCCCCGAGGCCcgaccGCCGCGCcucGgGGCGCc -3'
miRNA:   3'- gCGGGGCUCUGG-----UGGUGUG---UgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 58185 0.84 0.128656
Target:  5'- cCGCCCCGcGGCCGCCGCACcgaGACGCu -3'
miRNA:   3'- -GCGGGGCuCUGGUGGUGUGug-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 34801 0.76 0.364075
Target:  5'- cCGCCuCCGAGGCCGCC-CcCGCcACGCg -3'
miRNA:   3'- -GCGG-GGCUCUGGUGGuGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 132793 0.86 0.099158
Target:  5'- gGCCCCGGGucGCCGCCcCGCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUC--UGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 126429 0.77 0.333183
Target:  5'- uGCCCCccAGGCaGCCGCGCGCGGCACc -3'
miRNA:   3'- gCGGGGc-UCUGgUGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 84414 0.76 0.356169
Target:  5'- aCGCCCCGcgacgacccgGGGCCcccgGCCGCACcCAGCACc -3'
miRNA:   3'- -GCGGGGC----------UCUGG----UGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 119155 0.78 0.290534
Target:  5'- cCGCCCCGcGGACUggACCACGCACcACAa -3'
miRNA:   3'- -GCGGGGC-UCUGG--UGGUGUGUGuUGUg -5'
21374 3' -56.4 NC_004812.1 + 120816 0.79 0.252283
Target:  5'- gGCCCCGAGACgCACUuCACGCAGUACc -3'
miRNA:   3'- gCGGGGCUCUG-GUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 28617 0.81 0.183628
Target:  5'- cCGCCCgCGAGGCCGCCGcCGC-CGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUGGUGGU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 12441 0.83 0.14259
Target:  5'- uCGUCUCGAuGGCCGCCGCGCACAcACACg -3'
miRNA:   3'- -GCGGGGCU-CUGGUGGUGUGUGU-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 117820 0.75 0.422724
Target:  5'- gCGCCCCGcAGACCACgCGCGUGC-GCGCg -3'
miRNA:   3'- -GCGGGGC-UCUGGUG-GUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27605 0.75 0.408821
Target:  5'- gGCCCCGGGcccgcgcccgcggcCCGCCGCGCugACGGCGCg -3'
miRNA:   3'- gCGGGGCUCu-------------GGUGGUGUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 33534 0.76 0.372101
Target:  5'- cCGCCCCgcGAGACCugCGCcgucuGCACGgaGCGCa -3'
miRNA:   3'- -GCGGGG--CUCUGGugGUG-----UGUGU--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 81657 0.76 0.372101
Target:  5'- gCGCaCCCGcuGACCGCgGCGCGCGACGg -3'
miRNA:   3'- -GCG-GGGCu-CUGGUGgUGUGUGUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.