Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 122547 | 0.66 | 0.908617 |
Target: 5'- -gGGgcGGGGGG-CgCGgGGGGGGGCGg -3' miRNA: 3'- ugUCauCCCCUCaG-GCaCUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 118599 | 0.7 | 0.688331 |
Target: 5'- gGCGGUGGGGG--UCCGaggGGGAGAGaCa -3' miRNA: 3'- -UGUCAUCCCCucAGGCa--CUCUCUC-Gc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 118304 | 1.09 | 0.002654 |
Target: 5'- cACAGUAGGGGAGUCCGUGAGAGAGCGg -3' miRNA: 3'- -UGUCAUCCCCUCAGGCACUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 116919 | 0.72 | 0.607192 |
Target: 5'- gGCGGgaGGGGGAGgaggCCGgagugGGGGGGGUGg -3' miRNA: 3'- -UGUCa-UCCCCUCa---GGCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 115525 | 0.69 | 0.757029 |
Target: 5'- aACGGgcGGGGAGUaCGgaGGGGGGGCc -3' miRNA: 3'- -UGUCauCCCCUCAgGCa-CUCUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 106751 | 0.66 | 0.882597 |
Target: 5'- cCGGgcgcGGGGGGGUCgGagGAG-GGGCGg -3' miRNA: 3'- uGUCa---UCCCCUCAGgCa-CUCuCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 104172 | 0.68 | 0.785017 |
Target: 5'- cGCGGgcGGGGGGaugggcggcgaUgCGggGAGGGAGCGa -3' miRNA: 3'- -UGUCauCCCCUC-----------AgGCa-CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 101406 | 0.66 | 0.887411 |
Target: 5'- -uGGUAGGGGGucGUCCGcagcuggcggucggUGAGcucgcGGAGCGc -3' miRNA: 3'- ugUCAUCCCCU--CAGGC--------------ACUC-----UCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 100862 | 0.67 | 0.828837 |
Target: 5'- gACGGggccgcGGGGGAGg-CGgGGGAGGGCGc -3' miRNA: 3'- -UGUCa-----UCCCCUCagGCaCUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 80690 | 0.67 | 0.860766 |
Target: 5'- cCAGgucccUGGGGGGGUCCGgcccgGGGaAGGGaCGa -3' miRNA: 3'- uGUC-----AUCCCCUCAGGCa----CUC-UCUC-GC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 80618 | 0.76 | 0.390231 |
Target: 5'- uCGGUGGGGG-GUCCGcggugGAGAgGGGCGg -3' miRNA: 3'- uGUCAUCCCCuCAGGCa----CUCU-CUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 77937 | 0.67 | 0.860766 |
Target: 5'- aGCGGUucGGGGuGGGUCgggGUGGcGGGGGCGa -3' miRNA: 3'- -UGUCA--UCCC-CUCAGg--CACU-CUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 72124 | 0.66 | 0.908617 |
Target: 5'- cCGGUGGaGGcGGGUCgG-GAGGGuGCGg -3' miRNA: 3'- uGUCAUC-CC-CUCAGgCaCUCUCuCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 71864 | 0.68 | 0.784102 |
Target: 5'- -gGGaUGGGGGucggccaGGUUgGUGAGAGAGCc -3' miRNA: 3'- ugUC-AUCCCC-------UCAGgCACUCUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 70880 | 0.66 | 0.902455 |
Target: 5'- uGCGcgGGGGGGG-CgGgGAGGGGGCGg -3' miRNA: 3'- -UGUcaUCCCCUCaGgCaCUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 70272 | 0.66 | 0.896062 |
Target: 5'- cGCGGUGGGGGGcaacucguuGUCCGgggcguugucGAGAucGCGg -3' miRNA: 3'- -UGUCAUCCCCU---------CAGGCa---------CUCUcuCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 69954 | 0.7 | 0.668154 |
Target: 5'- gGCcGaGGGGGGGUCUGUGGccGGGGGCu -3' miRNA: 3'- -UGuCaUCCCCUCAGGCACU--CUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 66085 | 0.68 | 0.785017 |
Target: 5'- cGCcGUAGGuGGGGUCCGgguAGaAGAGCa -3' miRNA: 3'- -UGuCAUCC-CCUCAGGCac-UC-UCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 50198 | 0.67 | 0.868254 |
Target: 5'- cGCAG-AGGaacgccGGGG-CCGUGAGGccGAGCGg -3' miRNA: 3'- -UGUCaUCC------CCUCaGGCACUCU--CUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 47840 | 0.72 | 0.566812 |
Target: 5'- gGCGGUGGGGGAGg----GGGAGAGgGg -3' miRNA: 3'- -UGUCAUCCCCUCaggcaCUCUCUCgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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