miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 5' -55.8 NC_004812.1 + 112308 0.66 0.916453
Target:  5'- -aGCUCGAg-UCgCGCCUCgGGCGgcugGCc -3'
miRNA:   3'- ggCGAGCUagAG-GUGGAGaCCGCa---UG- -5'
21377 5' -55.8 NC_004812.1 + 72522 0.66 0.916453
Target:  5'- gCGCUCGGUCgccgucCCGCUUC-GGUGaGCc -3'
miRNA:   3'- gGCGAGCUAGa-----GGUGGAGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 144301 0.66 0.916453
Target:  5'- aCGCcCGGcaacCUCCGCCUCaacaGcGCGUACg -3'
miRNA:   3'- gGCGaGCUa---GAGGUGGAGa---C-CGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 65148 0.66 0.922063
Target:  5'- aCCGCUUcugcaUCCGCCUucugcgggcgCUGGgGUACg -3'
miRNA:   3'- -GGCGAGcuag-AGGUGGA----------GACCgCAUG- -5'
21377 5' -55.8 NC_004812.1 + 104106 0.66 0.922063
Target:  5'- -gGCgUCG-UCUCCGCCgUCUcgGGCGUGu -3'
miRNA:   3'- ggCG-AGCuAGAGGUGG-AGA--CCGCAUg -5'
21377 5' -55.8 NC_004812.1 + 55913 0.66 0.932576
Target:  5'- -gGcCUCGAUCUgguCCUCUGGCGa-- -3'
miRNA:   3'- ggC-GAGCUAGAgguGGAGACCGCaug -5'
21377 5' -55.8 NC_004812.1 + 143527 0.66 0.927962
Target:  5'- gCCGcCUCGAgcaUUUCCGCCgugaacgaggcggccCUGGCGcGCc -3'
miRNA:   3'- -GGC-GAGCU---AGAGGUGGa--------------GACCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 90046 0.66 0.922063
Target:  5'- gCCGCUCGuccCUCCGCCgaCUGGa--GCc -3'
miRNA:   3'- -GGCGAGCua-GAGGUGGa-GACCgcaUG- -5'
21377 5' -55.8 NC_004812.1 + 94096 0.66 0.927437
Target:  5'- cCCGCUCGcgUg-CGCC-CUGGCccugGUGCg -3'
miRNA:   3'- -GGCGAGCuaGagGUGGaGACCG----CAUG- -5'
21377 5' -55.8 NC_004812.1 + 32403 0.66 0.922063
Target:  5'- gCCGCggccUCGGUCgCCGCCgcgGGCGcgGCc -3'
miRNA:   3'- -GGCG----AGCUAGaGGUGGagaCCGCa-UG- -5'
21377 5' -55.8 NC_004812.1 + 143398 0.66 0.916453
Target:  5'- aUCGCgcaGAUCgCCAUC-CcGGCGUGCa -3'
miRNA:   3'- -GGCGag-CUAGaGGUGGaGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 128270 0.66 0.932576
Target:  5'- cCCGCUUcGUCagCGCCUUuaUGGCGgcCa -3'
miRNA:   3'- -GGCGAGcUAGagGUGGAG--ACCGCauG- -5'
21377 5' -55.8 NC_004812.1 + 111149 0.66 0.932576
Target:  5'- gCCGCUCGggCUCCucGCCcccCcGGCGg-- -3'
miRNA:   3'- -GGCGAGCuaGAGG--UGGa--GaCCGCaug -5'
21377 5' -55.8 NC_004812.1 + 129804 0.66 0.910609
Target:  5'- gUCGCcCGA-CUUCGCCauggccaucCUGGCGUACc -3'
miRNA:   3'- -GGCGaGCUaGAGGUGGa--------GACCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 126686 0.67 0.898225
Target:  5'- gCUGCUCGG-CUCCACCcgCgGGcCGcGCa -3'
miRNA:   3'- -GGCGAGCUaGAGGUGGa-GaCC-GCaUG- -5'
21377 5' -55.8 NC_004812.1 + 108401 0.67 0.891689
Target:  5'- gCGCUCGAUCUCaaccggCACgUC-GGCGgccUGCa -3'
miRNA:   3'- gGCGAGCUAGAG------GUGgAGaCCGC---AUG- -5'
21377 5' -55.8 NC_004812.1 + 44496 0.67 0.88493
Target:  5'- gCCGCUgGAUCUCCugCU----CGUACc -3'
miRNA:   3'- -GGCGAgCUAGAGGugGAgaccGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 126312 0.67 0.877949
Target:  5'- cCCGCggaGGUCcCCAgggaccCCUC-GGCGUGCu -3'
miRNA:   3'- -GGCGag-CUAGaGGU------GGAGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 4507 0.67 0.898225
Target:  5'- gCGgUCGAgCUCCACgUCgccGGCGgugACg -3'
miRNA:   3'- gGCgAGCUaGAGGUGgAGa--CCGCa--UG- -5'
21377 5' -55.8 NC_004812.1 + 16958 0.67 0.898225
Target:  5'- aCCGUUCGuUCaCCGCCacgGGCGUAg -3'
miRNA:   3'- -GGCGAGCuAGaGGUGGagaCCGCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.