miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 5' -55.8 NC_004812.1 + 4507 0.67 0.898225
Target:  5'- gCGgUCGAgCUCCACgUCgccGGCGgugACg -3'
miRNA:   3'- gGCgAGCUaGAGGUGgAGa--CCGCa--UG- -5'
21377 5' -55.8 NC_004812.1 + 9551 0.69 0.806111
Target:  5'- cCCGCUuCGGcCaCCGCCUCUGGUuaACa -3'
miRNA:   3'- -GGCGA-GCUaGaGGUGGAGACCGcaUG- -5'
21377 5' -55.8 NC_004812.1 + 13571 0.71 0.692028
Target:  5'- cCCcCUCGcgCgCCACCUUgaggugGGCGUGCa -3'
miRNA:   3'- -GGcGAGCuaGaGGUGGAGa-----CCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 16958 0.67 0.898225
Target:  5'- aCCGUUCGuUCaCCGCCacgGGCGUAg -3'
miRNA:   3'- -GGCGAGCuAGaGGUGGagaCCGCAUg -5'
21377 5' -55.8 NC_004812.1 + 19803 0.67 0.906991
Target:  5'- gCCGCUCGG-C-CCACCUCgcgcuccagGGCcaccagcgcgcacgcGUACa -3'
miRNA:   3'- -GGCGAGCUaGaGGUGGAGa--------CCG---------------CAUG- -5'
21377 5' -55.8 NC_004812.1 + 21050 0.68 0.863346
Target:  5'- gCGCgaCGAUCUCCGCCgggCUGaCGUcgggGCg -3'
miRNA:   3'- gGCGa-GCUAGAGGUGGa--GACcGCA----UG- -5'
21377 5' -55.8 NC_004812.1 + 22576 0.67 0.870753
Target:  5'- gCCGCUCGAUCgUUACCaUCgGGUGcACc -3'
miRNA:   3'- -GGCGAGCUAGaGGUGG-AGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 23465 0.67 0.884929
Target:  5'- gCGCUCG-UCgUCCuCCUgCUGGCGg-- -3'
miRNA:   3'- gGCGAGCuAG-AGGuGGA-GACCGCaug -5'
21377 5' -55.8 NC_004812.1 + 27209 0.68 0.863346
Target:  5'- gCCGC-CGcgCcCgCGCCUCUGGC-UGCg -3'
miRNA:   3'- -GGCGaGCuaGaG-GUGGAGACCGcAUG- -5'
21377 5' -55.8 NC_004812.1 + 30370 0.67 0.89433
Target:  5'- gCCGCUCGGcggccgggucggggcUCUCCuCCgggGGCGcgGCg -3'
miRNA:   3'- -GGCGAGCU---------------AGAGGuGGagaCCGCa-UG- -5'
21377 5' -55.8 NC_004812.1 + 32403 0.66 0.922063
Target:  5'- gCCGCggccUCGGUCgCCGCCgcgGGCGcgGCc -3'
miRNA:   3'- -GGCG----AGCUAGaGGUGGagaCCGCa-UG- -5'
21377 5' -55.8 NC_004812.1 + 44496 0.67 0.88493
Target:  5'- gCCGCUgGAUCUCCugCU----CGUACc -3'
miRNA:   3'- -GGCGAgCUAGAGGugGAgaccGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 45274 0.68 0.863346
Target:  5'- cCCGCggGGUCggcgCCGCCgcgggcagaCUGGCGUugGCg -3'
miRNA:   3'- -GGCGagCUAGa---GGUGGa--------GACCGCA--UG- -5'
21377 5' -55.8 NC_004812.1 + 47863 0.68 0.863346
Target:  5'- gCGCUCGGUCgguuuuaaccgCC-CCUCUcGGCG-GCg -3'
miRNA:   3'- gGCGAGCUAGa----------GGuGGAGA-CCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 50454 0.67 0.891689
Target:  5'- gCCGC-CGAggccgagCUCgGCCUC-GGCGgGCg -3'
miRNA:   3'- -GGCGaGCUa------GAGgUGGAGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 55913 0.66 0.932576
Target:  5'- -gGcCUCGAUCUgguCCUCUGGCGa-- -3'
miRNA:   3'- ggC-GAGCUAGAgguGGAGACCGCaug -5'
21377 5' -55.8 NC_004812.1 + 61058 0.7 0.750921
Target:  5'- cCCGCUCGAcC-CCGCCgg-GGCGcgACg -3'
miRNA:   3'- -GGCGAGCUaGaGGUGGagaCCGCa-UG- -5'
21377 5' -55.8 NC_004812.1 + 65148 0.66 0.922063
Target:  5'- aCCGCUUcugcaUCCGCCUucugcgggcgCUGGgGUACg -3'
miRNA:   3'- -GGCGAGcuag-AGGUGGA----------GACCgCAUG- -5'
21377 5' -55.8 NC_004812.1 + 70633 0.76 0.419322
Target:  5'- -gGCcCGGUCUCCAgCCUCUGGCGc-- -3'
miRNA:   3'- ggCGaGCUAGAGGU-GGAGACCGCaug -5'
21377 5' -55.8 NC_004812.1 + 72522 0.66 0.916453
Target:  5'- gCGCUCGGUCgccgucCCGCUUC-GGUGaGCc -3'
miRNA:   3'- gGCGAGCUAGa-----GGUGGAGaCCGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.