miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 5' -55.8 NC_004812.1 + 152717 0.68 0.863346
Target:  5'- gCCGC-CGcgCcCgCGCCUCUGGC-UGCg -3'
miRNA:   3'- -GGCGaGCuaGaG-GUGGAGACCGcAUG- -5'
21377 5' -55.8 NC_004812.1 + 148133 1.1 0.00278
Target:  5'- gCCGCUCGAUCUCCACCUCUGGCGUACc -3'
miRNA:   3'- -GGCGAGCUAGAGGUGGAGACCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 145321 0.68 0.831726
Target:  5'- cCCGCgCGG-Cg-CGCCUCgugGGCGUGCu -3'
miRNA:   3'- -GGCGaGCUaGagGUGGAGa--CCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 144301 0.66 0.916453
Target:  5'- aCGCcCGGcaacCUCCGCCUCaacaGcGCGUACg -3'
miRNA:   3'- gGCGaGCUa---GAGGUGGAGa---C-CGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 143588 0.73 0.58072
Target:  5'- cCCGCgacccccggCGAUCaggCCGCCUCcGGCGgcgGCg -3'
miRNA:   3'- -GGCGa--------GCUAGa--GGUGGAGaCCGCa--UG- -5'
21377 5' -55.8 NC_004812.1 + 143527 0.66 0.927962
Target:  5'- gCCGcCUCGAgcaUUUCCGCCgugaacgaggcggccCUGGCGcGCc -3'
miRNA:   3'- -GGC-GAGCU---AGAGGUGGa--------------GACCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 143398 0.66 0.916453
Target:  5'- aUCGCgcaGAUCgCCAUC-CcGGCGUGCa -3'
miRNA:   3'- -GGCGag-CUAGaGGUGGaGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 140386 0.69 0.779099
Target:  5'- gCCgGC-CGG-CUCCGCCUCcGGCGcGCg -3'
miRNA:   3'- -GG-CGaGCUaGAGGUGGAGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 138774 0.69 0.779099
Target:  5'- gCGCUCGAUCccggCCGCCUg-GGuCGUGg -3'
miRNA:   3'- gGCGAGCUAGa---GGUGGAgaCC-GCAUg -5'
21377 5' -55.8 NC_004812.1 + 131328 0.76 0.436971
Target:  5'- uCCGCUCGAUCgCCcgGCC-C-GGCGUGCg -3'
miRNA:   3'- -GGCGAGCUAGaGG--UGGaGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 130015 0.67 0.898225
Target:  5'- gCGgUCGAgCUCCACgUCgccGGCGgugACg -3'
miRNA:   3'- gGCgAGCUaGAGGUGgAGa--CCGCa--UG- -5'
21377 5' -55.8 NC_004812.1 + 129804 0.66 0.910609
Target:  5'- gUCGCcCGA-CUUCGCCauggccaucCUGGCGUACc -3'
miRNA:   3'- -GGCGaGCUaGAGGUGGa--------GACCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 128270 0.66 0.932576
Target:  5'- cCCGCUUcGUCagCGCCUUuaUGGCGgcCa -3'
miRNA:   3'- -GGCGAGcUAGagGUGGAG--ACCGCauG- -5'
21377 5' -55.8 NC_004812.1 + 126686 0.67 0.898225
Target:  5'- gCUGCUCGG-CUCCACCcgCgGGcCGcGCa -3'
miRNA:   3'- -GGCGAGCUaGAGGUGGa-GaCC-GCaUG- -5'
21377 5' -55.8 NC_004812.1 + 126312 0.67 0.877949
Target:  5'- cCCGCggaGGUCcCCAgggaccCCUC-GGCGUGCu -3'
miRNA:   3'- -GGCGag-CUAGaGGU------GGAGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 117232 1.1 0.00278
Target:  5'- gCCGCUCGAUCUCCACCUCUGGCGUACc -3'
miRNA:   3'- -GGCGAGCUAGAGGUGGAGACCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 115858 0.67 0.868553
Target:  5'- cCCGCUCGGggCUCCcgcgccaacaucguGCCgaUGGCGcUGCg -3'
miRNA:   3'- -GGCGAGCUa-GAGG--------------UGGagACCGC-AUG- -5'
21377 5' -55.8 NC_004812.1 + 112308 0.66 0.916453
Target:  5'- -aGCUCGAg-UCgCGCCUCgGGCGgcugGCc -3'
miRNA:   3'- ggCGAGCUagAG-GUGGAGaCCGCa---UG- -5'
21377 5' -55.8 NC_004812.1 + 111906 0.72 0.661796
Target:  5'- gUGCUUcGUCUCCGCCaUCUuacucgcggaGGCGUACu -3'
miRNA:   3'- gGCGAGcUAGAGGUGG-AGA----------CCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 111149 0.66 0.932576
Target:  5'- gCCGCUCGggCUCCucGCCcccCcGGCGg-- -3'
miRNA:   3'- -GGCGAGCuaGAGG--UGGa--GaCCGCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.