miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 5' -55.8 NC_004812.1 + 30370 0.67 0.89433
Target:  5'- gCCGCUCGGcggccgggucggggcUCUCCuCCgggGGCGcgGCg -3'
miRNA:   3'- -GGCGAGCU---------------AGAGGuGGagaCCGCa-UG- -5'
21377 5' -55.8 NC_004812.1 + 47863 0.68 0.863346
Target:  5'- gCGCUCGGUCgguuuuaaccgCC-CCUCUcGGCG-GCg -3'
miRNA:   3'- gGCGAGCUAGa----------GGuGGAGA-CCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 87215 0.68 0.863346
Target:  5'- cCCGCUCGGUUUCCuuCgaggcCUGGaugcgGUGCa -3'
miRNA:   3'- -GGCGAGCUAGAGGugGa----GACCg----CAUG- -5'
21377 5' -55.8 NC_004812.1 + 45274 0.68 0.863346
Target:  5'- cCCGCggGGUCggcgCCGCCgcgggcagaCUGGCGUugGCg -3'
miRNA:   3'- -GGCGagCUAGa---GGUGGa--------GACCGCA--UG- -5'
21377 5' -55.8 NC_004812.1 + 22576 0.67 0.870753
Target:  5'- gCCGCUCGAUCgUUACCaUCgGGUGcACc -3'
miRNA:   3'- -GGCGAGCUAGaGGUGG-AGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 107846 0.67 0.870753
Target:  5'- cUCGCggaggCGGggCUCCGCCUCcgagGGCGg-- -3'
miRNA:   3'- -GGCGa----GCUa-GAGGUGGAGa---CCGCaug -5'
21377 5' -55.8 NC_004812.1 + 95726 0.67 0.870753
Target:  5'- aCCGC-CGAcUUCCGCCugcagaUCUGGCGc-- -3'
miRNA:   3'- -GGCGaGCUaGAGGUGG------AGACCGCaug -5'
21377 5' -55.8 NC_004812.1 + 23465 0.67 0.884929
Target:  5'- gCGCUCG-UCgUCCuCCUgCUGGCGg-- -3'
miRNA:   3'- gGCGAGCuAG-AGGuGGA-GACCGCaug -5'
21377 5' -55.8 NC_004812.1 + 50454 0.67 0.891689
Target:  5'- gCCGC-CGAggccgagCUCgGCCUC-GGCGgGCg -3'
miRNA:   3'- -GGCGaGCUa------GAGgUGGAGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 21050 0.68 0.863346
Target:  5'- gCGCgaCGAUCUCCGCCgggCUGaCGUcgggGCg -3'
miRNA:   3'- gGCGa-GCUAGAGGUGGa--GACcGCA----UG- -5'
21377 5' -55.8 NC_004812.1 + 152717 0.68 0.863346
Target:  5'- gCCGC-CGcgCcCgCGCCUCUGGC-UGCg -3'
miRNA:   3'- -GGCGaGCuaGaG-GUGGAGACCGcAUG- -5'
21377 5' -55.8 NC_004812.1 + 81760 0.68 0.855733
Target:  5'- gCUGCUCGAuguUCUCCGCCaUCUGcauCGUc- -3'
miRNA:   3'- -GGCGAGCU---AGAGGUGG-AGACc--GCAug -5'
21377 5' -55.8 NC_004812.1 + 70633 0.76 0.419322
Target:  5'- -gGCcCGGUCUCCAgCCUCUGGCGc-- -3'
miRNA:   3'- ggCGaGCUAGAGGU-GGAGACCGCaug -5'
21377 5' -55.8 NC_004812.1 + 101311 0.74 0.530983
Target:  5'- cCCGCgcCGAgC-CCACCUC-GGCGUGCa -3'
miRNA:   3'- -GGCGa-GCUaGaGGUGGAGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 111906 0.72 0.661796
Target:  5'- gUGCUUcGUCUCCGCCaUCUuacucgcggaGGCGUACu -3'
miRNA:   3'- gGCGAGcUAGAGGUGG-AGA----------CCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 13571 0.71 0.692028
Target:  5'- cCCcCUCGcgCgCCACCUUgaggugGGCGUGCa -3'
miRNA:   3'- -GGcGAGCuaGaGGUGGAGa-----CCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 138774 0.69 0.779099
Target:  5'- gCGCUCGAUCccggCCGCCUg-GGuCGUGg -3'
miRNA:   3'- gGCGAGCUAGa---GGUGGAgaCC-GCAUg -5'
21377 5' -55.8 NC_004812.1 + 75733 0.68 0.82251
Target:  5'- gCgGCUCcGUgUCCACCcggaacaUCUcGGCGUACg -3'
miRNA:   3'- -GgCGAGcUAgAGGUGG-------AGA-CCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 145321 0.68 0.831726
Target:  5'- cCCGCgCGG-Cg-CGCCUCgugGGCGUGCu -3'
miRNA:   3'- -GGCGaGCUaGagGUGGAGa--CCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 76189 0.68 0.854187
Target:  5'- gCCGCUCGGggacgggUCcCCGgcggagcCCUC-GGCGUGCa -3'
miRNA:   3'- -GGCGAGCU-------AGaGGU-------GGAGaCCGCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.