Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21377 | 5' | -55.8 | NC_004812.1 | + | 13571 | 0.71 | 0.692028 |
Target: 5'- cCCcCUCGcgCgCCACCUUgaggugGGCGUGCa -3' miRNA: 3'- -GGcGAGCuaGaGGUGGAGa-----CCGCAUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 138774 | 0.69 | 0.779099 |
Target: 5'- gCGCUCGAUCccggCCGCCUg-GGuCGUGg -3' miRNA: 3'- gGCGAGCUAGa---GGUGGAgaCC-GCAUg -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 75733 | 0.68 | 0.82251 |
Target: 5'- gCgGCUCcGUgUCCACCcggaacaUCUcGGCGUACg -3' miRNA: 3'- -GgCGAGcUAgAGGUGG-------AGA-CCGCAUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 145321 | 0.68 | 0.831726 |
Target: 5'- cCCGCgCGG-Cg-CGCCUCgugGGCGUGCu -3' miRNA: 3'- -GGCGaGCUaGagGUGGAGa--CCGCAUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 47863 | 0.68 | 0.863346 |
Target: 5'- gCGCUCGGUCgguuuuaaccgCC-CCUCUcGGCG-GCg -3' miRNA: 3'- gGCGAGCUAGa----------GGuGGAGA-CCGCaUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 21050 | 0.68 | 0.863346 |
Target: 5'- gCGCgaCGAUCUCCGCCgggCUGaCGUcgggGCg -3' miRNA: 3'- gGCGa-GCUAGAGGUGGa--GACcGCA----UG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 152717 | 0.68 | 0.863346 |
Target: 5'- gCCGC-CGcgCcCgCGCCUCUGGC-UGCg -3' miRNA: 3'- -GGCGaGCuaGaG-GUGGAGACCGcAUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 81760 | 0.68 | 0.855733 |
Target: 5'- gCUGCUCGAuguUCUCCGCCaUCUGcauCGUc- -3' miRNA: 3'- -GGCGAGCU---AGAGGUGG-AGACc--GCAug -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 76189 | 0.68 | 0.854187 |
Target: 5'- gCCGCUCGGggacgggUCcCCGgcggagcCCUC-GGCGUGCa -3' miRNA: 3'- -GGCGAGCU-------AGaGGU-------GGAGaCCGCAUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 103519 | 0.68 | 0.861083 |
Target: 5'- aUGCUCGGggacgugauggccgUCUCCACCU---GCGUGCc -3' miRNA: 3'- gGCGAGCU--------------AGAGGUGGAgacCGCAUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 79223 | 0.68 | 0.855734 |
Target: 5'- cCCGC-CGAcCUggCCGCCUggCUGGCGUcGCu -3' miRNA: 3'- -GGCGaGCUaGA--GGUGGA--GACCGCA-UG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 109607 | 0.69 | 0.814815 |
Target: 5'- gCGCUCGAUCgggUCGCCggUCcGGCGgGCc -3' miRNA: 3'- gGCGAGCUAGa--GGUGG--AGaCCGCaUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 9551 | 0.69 | 0.806111 |
Target: 5'- cCCGCUuCGGcCaCCGCCUCUGGUuaACa -3' miRNA: 3'- -GGCGA-GCUaGaGGUGGAGACCGcaUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 140386 | 0.69 | 0.779099 |
Target: 5'- gCCgGC-CGG-CUCCGCCUCcGGCGcGCg -3' miRNA: 3'- -GG-CGaGCUaGAGGUGGAGaCCGCaUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 90152 | 0.7 | 0.750921 |
Target: 5'- gCGCUCGcUCUCCguGCCcCUGGUGaggACg -3' miRNA: 3'- gGCGAGCuAGAGG--UGGaGACCGCa--UG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 61058 | 0.7 | 0.750921 |
Target: 5'- cCCGCUCGAcC-CCGCCgg-GGCGcgACg -3' miRNA: 3'- -GGCGAGCUaGaGGUGGagaCCGCa-UG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 143588 | 0.73 | 0.58072 |
Target: 5'- cCCGCgacccccggCGAUCaggCCGCCUCcGGCGgcgGCg -3' miRNA: 3'- -GGCGa--------GCUAGa--GGUGGAGaCCGCa--UG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 74696 | 0.73 | 0.560673 |
Target: 5'- cCCGCUCGAUCgcgUUCGCC-CUGcGgGUGCu -3' miRNA: 3'- -GGCGAGCUAG---AGGUGGaGAC-CgCAUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 131328 | 0.76 | 0.436971 |
Target: 5'- uCCGCUCGAUCgCCcgGCC-C-GGCGUGCg -3' miRNA: 3'- -GGCGAGCUAGaGG--UGGaGaCCGCAUG- -5' |
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21377 | 5' | -55.8 | NC_004812.1 | + | 128270 | 0.66 | 0.932576 |
Target: 5'- cCCGCUUcGUCagCGCCUUuaUGGCGgcCa -3' miRNA: 3'- -GGCGAGcUAGagGUGGAG--ACCGCauG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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