miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 5' -55.8 NC_004812.1 + 74696 0.73 0.560673
Target:  5'- cCCGCUCGAUCgcgUUCGCC-CUGcGgGUGCu -3'
miRNA:   3'- -GGCGAGCUAG---AGGUGGaGAC-CgCAUG- -5'
21377 5' -55.8 NC_004812.1 + 75733 0.68 0.82251
Target:  5'- gCgGCUCcGUgUCCACCcggaacaUCUcGGCGUACg -3'
miRNA:   3'- -GgCGAGcUAgAGGUGG-------AGA-CCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 76189 0.68 0.854187
Target:  5'- gCCGCUCGGggacgggUCcCCGgcggagcCCUC-GGCGUGCa -3'
miRNA:   3'- -GGCGAGCU-------AGaGGU-------GGAGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 79223 0.68 0.855734
Target:  5'- cCCGC-CGAcCUggCCGCCUggCUGGCGUcGCu -3'
miRNA:   3'- -GGCGaGCUaGA--GGUGGA--GACCGCA-UG- -5'
21377 5' -55.8 NC_004812.1 + 81760 0.68 0.855733
Target:  5'- gCUGCUCGAuguUCUCCGCCaUCUGcauCGUc- -3'
miRNA:   3'- -GGCGAGCU---AGAGGUGG-AGACc--GCAug -5'
21377 5' -55.8 NC_004812.1 + 87215 0.68 0.863346
Target:  5'- cCCGCUCGGUUUCCuuCgaggcCUGGaugcgGUGCa -3'
miRNA:   3'- -GGCGAGCUAGAGGugGa----GACCg----CAUG- -5'
21377 5' -55.8 NC_004812.1 + 90046 0.66 0.922063
Target:  5'- gCCGCUCGuccCUCCGCCgaCUGGa--GCc -3'
miRNA:   3'- -GGCGAGCua-GAGGUGGa-GACCgcaUG- -5'
21377 5' -55.8 NC_004812.1 + 90152 0.7 0.750921
Target:  5'- gCGCUCGcUCUCCguGCCcCUGGUGaggACg -3'
miRNA:   3'- gGCGAGCuAGAGG--UGGaGACCGCa--UG- -5'
21377 5' -55.8 NC_004812.1 + 94096 0.66 0.927437
Target:  5'- cCCGCUCGcgUg-CGCC-CUGGCccugGUGCg -3'
miRNA:   3'- -GGCGAGCuaGagGUGGaGACCG----CAUG- -5'
21377 5' -55.8 NC_004812.1 + 95726 0.67 0.870753
Target:  5'- aCCGC-CGAcUUCCGCCugcagaUCUGGCGc-- -3'
miRNA:   3'- -GGCGaGCUaGAGGUGG------AGACCGCaug -5'
21377 5' -55.8 NC_004812.1 + 101311 0.74 0.530983
Target:  5'- cCCGCgcCGAgC-CCACCUC-GGCGUGCa -3'
miRNA:   3'- -GGCGa-GCUaGaGGUGGAGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 103519 0.68 0.861083
Target:  5'- aUGCUCGGggacgugauggccgUCUCCACCU---GCGUGCc -3'
miRNA:   3'- gGCGAGCU--------------AGAGGUGGAgacCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 104106 0.66 0.922063
Target:  5'- -gGCgUCG-UCUCCGCCgUCUcgGGCGUGu -3'
miRNA:   3'- ggCG-AGCuAGAGGUGG-AGA--CCGCAUg -5'
21377 5' -55.8 NC_004812.1 + 107846 0.67 0.870753
Target:  5'- cUCGCggaggCGGggCUCCGCCUCcgagGGCGg-- -3'
miRNA:   3'- -GGCGa----GCUa-GAGGUGGAGa---CCGCaug -5'
21377 5' -55.8 NC_004812.1 + 108401 0.67 0.891689
Target:  5'- gCGCUCGAUCUCaaccggCACgUC-GGCGgccUGCa -3'
miRNA:   3'- gGCGAGCUAGAG------GUGgAGaCCGC---AUG- -5'
21377 5' -55.8 NC_004812.1 + 109607 0.69 0.814815
Target:  5'- gCGCUCGAUCgggUCGCCggUCcGGCGgGCc -3'
miRNA:   3'- gGCGAGCUAGa--GGUGG--AGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 111149 0.66 0.932576
Target:  5'- gCCGCUCGggCUCCucGCCcccCcGGCGg-- -3'
miRNA:   3'- -GGCGAGCuaGAGG--UGGa--GaCCGCaug -5'
21377 5' -55.8 NC_004812.1 + 111906 0.72 0.661796
Target:  5'- gUGCUUcGUCUCCGCCaUCUuacucgcggaGGCGUACu -3'
miRNA:   3'- gGCGAGcUAGAGGUGG-AGA----------CCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 112308 0.66 0.916453
Target:  5'- -aGCUCGAg-UCgCGCCUCgGGCGgcugGCc -3'
miRNA:   3'- ggCGAGCUagAG-GUGGAGaCCGCa---UG- -5'
21377 5' -55.8 NC_004812.1 + 115858 0.67 0.868553
Target:  5'- cCCGCUCGGggCUCCcgcgccaacaucguGCCgaUGGCGcUGCg -3'
miRNA:   3'- -GGCGAGCUa-GAGG--------------UGGagACCGC-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.