miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 5' -55.8 NC_004812.1 + 148133 1.1 0.00278
Target:  5'- gCCGCUCGAUCUCCACCUCUGGCGUACc -3'
miRNA:   3'- -GGCGAGCUAGAGGUGGAGACCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 126686 0.67 0.898225
Target:  5'- gCUGCUCGG-CUCCACCcgCgGGcCGcGCa -3'
miRNA:   3'- -GGCGAGCUaGAGGUGGa-GaCC-GCaUG- -5'
21377 5' -55.8 NC_004812.1 + 72522 0.66 0.916453
Target:  5'- gCGCUCGGUCgccgucCCGCUUC-GGUGaGCc -3'
miRNA:   3'- gGCGAGCUAGa-----GGUGGAGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 128270 0.66 0.932576
Target:  5'- cCCGCUUcGUCagCGCCUUuaUGGCGgcCa -3'
miRNA:   3'- -GGCGAGcUAGagGUGGAG--ACCGCauG- -5'
21377 5' -55.8 NC_004812.1 + 61058 0.7 0.750921
Target:  5'- cCCGCUCGAcC-CCGCCgg-GGCGcgACg -3'
miRNA:   3'- -GGCGAGCUaGaGGUGGagaCCGCa-UG- -5'
21377 5' -55.8 NC_004812.1 + 90152 0.7 0.750921
Target:  5'- gCGCUCGcUCUCCguGCCcCUGGUGaggACg -3'
miRNA:   3'- gGCGAGCuAGAGG--UGGaGACCGCa--UG- -5'
21377 5' -55.8 NC_004812.1 + 9551 0.69 0.806111
Target:  5'- cCCGCUuCGGcCaCCGCCUCUGGUuaACa -3'
miRNA:   3'- -GGCGA-GCUaGaGGUGGAGACCGcaUG- -5'
21377 5' -55.8 NC_004812.1 + 109607 0.69 0.814815
Target:  5'- gCGCUCGAUCgggUCGCCggUCcGGCGgGCc -3'
miRNA:   3'- gGCGAGCUAGa--GGUGG--AGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 27209 0.68 0.863346
Target:  5'- gCCGC-CGcgCcCgCGCCUCUGGC-UGCg -3'
miRNA:   3'- -GGCGaGCuaGaG-GUGGAGACCGcAUG- -5'
21377 5' -55.8 NC_004812.1 + 4507 0.67 0.898225
Target:  5'- gCGgUCGAgCUCCACgUCgccGGCGgugACg -3'
miRNA:   3'- gGCgAGCUaGAGGUGgAGa--CCGCa--UG- -5'
21377 5' -55.8 NC_004812.1 + 126312 0.67 0.877949
Target:  5'- cCCGCggaGGUCcCCAgggaccCCUC-GGCGUGCu -3'
miRNA:   3'- -GGCGag-CUAGaGGU------GGAGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 103519 0.68 0.861083
Target:  5'- aUGCUCGGggacgugauggccgUCUCCACCU---GCGUGCc -3'
miRNA:   3'- gGCGAGCU--------------AGAGGUGGAgacCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 131328 0.76 0.436971
Target:  5'- uCCGCUCGAUCgCCcgGCC-C-GGCGUGCg -3'
miRNA:   3'- -GGCGAGCUAGaGG--UGGaGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 44496 0.67 0.88493
Target:  5'- gCCGCUgGAUCUCCugCU----CGUACc -3'
miRNA:   3'- -GGCGAgCUAGAGGugGAgaccGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 74696 0.73 0.560673
Target:  5'- cCCGCUCGAUCgcgUUCGCC-CUGcGgGUGCu -3'
miRNA:   3'- -GGCGAGCUAG---AGGUGGaGAC-CgCAUG- -5'
21377 5' -55.8 NC_004812.1 + 79223 0.68 0.855734
Target:  5'- cCCGC-CGAcCUggCCGCCUggCUGGCGUcGCu -3'
miRNA:   3'- -GGCGaGCUaGA--GGUGGA--GACCGCA-UG- -5'
21377 5' -55.8 NC_004812.1 + 108401 0.67 0.891689
Target:  5'- gCGCUCGAUCUCaaccggCACgUC-GGCGgccUGCa -3'
miRNA:   3'- gGCGAGCUAGAG------GUGgAGaCCGC---AUG- -5'
21377 5' -55.8 NC_004812.1 + 129804 0.66 0.910609
Target:  5'- gUCGCcCGA-CUUCGCCauggccaucCUGGCGUACc -3'
miRNA:   3'- -GGCGaGCUaGAGGUGGa--------GACCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 143588 0.73 0.58072
Target:  5'- cCCGCgacccccggCGAUCaggCCGCCUCcGGCGgcgGCg -3'
miRNA:   3'- -GGCGa--------GCUAGa--GGUGGAGaCCGCa--UG- -5'
21377 5' -55.8 NC_004812.1 + 140386 0.69 0.779099
Target:  5'- gCCgGC-CGG-CUCCGCCUCcGGCGcGCg -3'
miRNA:   3'- -GG-CGaGCUaGAGGUGGAGaCCGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.