miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 5' -55.8 NC_004812.1 + 108401 0.67 0.891689
Target:  5'- gCGCUCGAUCUCaaccggCACgUC-GGCGgccUGCa -3'
miRNA:   3'- gGCGAGCUAGAG------GUGgAGaCCGC---AUG- -5'
21377 5' -55.8 NC_004812.1 + 50454 0.67 0.891689
Target:  5'- gCCGC-CGAggccgagCUCgGCCUC-GGCGgGCg -3'
miRNA:   3'- -GGCGaGCUa------GAGgUGGAGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 44496 0.67 0.88493
Target:  5'- gCCGCUgGAUCUCCugCU----CGUACc -3'
miRNA:   3'- -GGCGAgCUAGAGGugGAgaccGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 23465 0.67 0.884929
Target:  5'- gCGCUCG-UCgUCCuCCUgCUGGCGg-- -3'
miRNA:   3'- gGCGAGCuAG-AGGuGGA-GACCGCaug -5'
21377 5' -55.8 NC_004812.1 + 126312 0.67 0.877949
Target:  5'- cCCGCggaGGUCcCCAgggaccCCUC-GGCGUGCu -3'
miRNA:   3'- -GGCGag-CUAGaGGU------GGAGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 95726 0.67 0.870753
Target:  5'- aCCGC-CGAcUUCCGCCugcagaUCUGGCGc-- -3'
miRNA:   3'- -GGCGaGCUaGAGGUGG------AGACCGCaug -5'
21377 5' -55.8 NC_004812.1 + 107846 0.67 0.870753
Target:  5'- cUCGCggaggCGGggCUCCGCCUCcgagGGCGg-- -3'
miRNA:   3'- -GGCGa----GCUa-GAGGUGGAGa---CCGCaug -5'
21377 5' -55.8 NC_004812.1 + 22576 0.67 0.870753
Target:  5'- gCCGCUCGAUCgUUACCaUCgGGUGcACc -3'
miRNA:   3'- -GGCGAGCUAGaGGUGG-AGaCCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 115858 0.67 0.868553
Target:  5'- cCCGCUCGGggCUCCcgcgccaacaucguGCCgaUGGCGcUGCg -3'
miRNA:   3'- -GGCGAGCUa-GAGG--------------UGGagACCGC-AUG- -5'
21377 5' -55.8 NC_004812.1 + 152717 0.68 0.863346
Target:  5'- gCCGC-CGcgCcCgCGCCUCUGGC-UGCg -3'
miRNA:   3'- -GGCGaGCuaGaG-GUGGAGACCGcAUG- -5'
21377 5' -55.8 NC_004812.1 + 21050 0.68 0.863346
Target:  5'- gCGCgaCGAUCUCCGCCgggCUGaCGUcgggGCg -3'
miRNA:   3'- gGCGa-GCUAGAGGUGGa--GACcGCA----UG- -5'
21377 5' -55.8 NC_004812.1 + 47863 0.68 0.863346
Target:  5'- gCGCUCGGUCgguuuuaaccgCC-CCUCUcGGCG-GCg -3'
miRNA:   3'- gGCGAGCUAGa----------GGuGGAGA-CCGCaUG- -5'
21377 5' -55.8 NC_004812.1 + 45274 0.68 0.863346
Target:  5'- cCCGCggGGUCggcgCCGCCgcgggcagaCUGGCGUugGCg -3'
miRNA:   3'- -GGCGagCUAGa---GGUGGa--------GACCGCA--UG- -5'
21377 5' -55.8 NC_004812.1 + 27209 0.68 0.863346
Target:  5'- gCCGC-CGcgCcCgCGCCUCUGGC-UGCg -3'
miRNA:   3'- -GGCGaGCuaGaG-GUGGAGACCGcAUG- -5'
21377 5' -55.8 NC_004812.1 + 87215 0.68 0.863346
Target:  5'- cCCGCUCGGUUUCCuuCgaggcCUGGaugcgGUGCa -3'
miRNA:   3'- -GGCGAGCUAGAGGugGa----GACCg----CAUG- -5'
21377 5' -55.8 NC_004812.1 + 103519 0.68 0.861083
Target:  5'- aUGCUCGGggacgugauggccgUCUCCACCU---GCGUGCc -3'
miRNA:   3'- gGCGAGCU--------------AGAGGUGGAgacCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 79223 0.68 0.855734
Target:  5'- cCCGC-CGAcCUggCCGCCUggCUGGCGUcGCu -3'
miRNA:   3'- -GGCGaGCUaGA--GGUGGA--GACCGCA-UG- -5'
21377 5' -55.8 NC_004812.1 + 81760 0.68 0.855733
Target:  5'- gCUGCUCGAuguUCUCCGCCaUCUGcauCGUc- -3'
miRNA:   3'- -GGCGAGCU---AGAGGUGG-AGACc--GCAug -5'
21377 5' -55.8 NC_004812.1 + 76189 0.68 0.854187
Target:  5'- gCCGCUCGGggacgggUCcCCGgcggagcCCUC-GGCGUGCa -3'
miRNA:   3'- -GGCGAGCU-------AGaGGU-------GGAGaCCGCAUG- -5'
21377 5' -55.8 NC_004812.1 + 145321 0.68 0.831726
Target:  5'- cCCGCgCGG-Cg-CGCCUCgugGGCGUGCu -3'
miRNA:   3'- -GGCGaGCUaGagGUGGAGa--CCGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.