miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 152640 0.72 0.568017
Target:  5'- -gGGCCGGcgCGCGGcggggGGgCGCCGGGc -3'
miRNA:   3'- ugUCGGUCuaGCGCCa----CUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 75446 0.71 0.576989
Target:  5'- gGCGGCCGGGUCGCcgcggaggcggacGGUcugcuccgcGGCCgcgGCCAGGu -3'
miRNA:   3'- -UGUCGGUCUAGCG-------------CCA---------CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 83196 0.71 0.577988
Target:  5'- cGCGGCgGGAggCGCGGcGGCCGCgcuCGGGg -3'
miRNA:   3'- -UGUCGgUCUa-GCGCCaCUGGUG---GUCC- -5'
21380 5' -57.3 NC_004812.1 + 70984 0.71 0.577988
Target:  5'- aGCAccGCgGGGccCGCGGgucGGCCGCCAGGg -3'
miRNA:   3'- -UGU--CGgUCUa-GCGCCa--CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 14366 0.71 0.577988
Target:  5'- cCGGCCGcgcGggCGCGGcGGCgCACCAGGu -3'
miRNA:   3'- uGUCGGU---CuaGCGCCaCUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 112978 0.71 0.577988
Target:  5'- gGCGGCgauGGAUCGCGGcgccgcGGCCGCCgAGGc -3'
miRNA:   3'- -UGUCGg--UCUAGCGCCa-----CUGGUGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 51489 0.71 0.587996
Target:  5'- cGCAGCCcug-CGCGGUcgcuuuGGCCGCgCAGGg -3'
miRNA:   3'- -UGUCGGucuaGCGCCA------CUGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 51791 0.71 0.596026
Target:  5'- cGCGGUCGGucggcgguaggUGCGGUGuCUACCGGGa -3'
miRNA:   3'- -UGUCGGUCua---------GCGCCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 70477 0.71 0.598036
Target:  5'- cCAGCCAgcaacggcGAUCgGCGGUGACC--CAGGg -3'
miRNA:   3'- uGUCGGU--------CUAG-CGCCACUGGugGUCC- -5'
21380 5' -57.3 NC_004812.1 + 86727 0.71 0.6081
Target:  5'- aGCGGCCGGAcgaCGaCGGcGACCagcGCCGGGc -3'
miRNA:   3'- -UGUCGGUCUa--GC-GCCaCUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 85267 0.71 0.6081
Target:  5'- -uGGCCAGcgucacCGCGGUGugCAgCGGGc -3'
miRNA:   3'- ugUCGGUCua----GCGCCACugGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 69143 0.71 0.628273
Target:  5'- cCGGCgAGGUC-CGaGUGGCaCGCCAGGu -3'
miRNA:   3'- uGUCGgUCUAGcGC-CACUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 76354 0.71 0.628273
Target:  5'- cACcGCCAGGUcCGCGGccGCCGCCcccAGGg -3'
miRNA:   3'- -UGuCGGUCUA-GCGCCacUGGUGG---UCC- -5'
21380 5' -57.3 NC_004812.1 + 19058 0.71 0.628273
Target:  5'- gGCGGCCgAGAcCGCGGcccaGGCCcgcGCCGGGc -3'
miRNA:   3'- -UGUCGG-UCUaGCGCCa---CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 63211 0.71 0.632311
Target:  5'- cACGGCCgAGAccgaguucgggcccgUCGCGGUGACgCACaugcuGGGg -3'
miRNA:   3'- -UGUCGG-UCU---------------AGCGCCACUG-GUGg----UCC- -5'
21380 5' -57.3 NC_004812.1 + 8354 0.7 0.638367
Target:  5'- cGCGGCCGccccaccgCGuCGGcGGCCGCCGGGg -3'
miRNA:   3'- -UGUCGGUcua-----GC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 106552 0.7 0.638367
Target:  5'- cGCAGCgGG--CGCGGUGGuccacguuaaUCGCCAGGg -3'
miRNA:   3'- -UGUCGgUCuaGCGCCACU----------GGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 39255 0.7 0.638367
Target:  5'- cGCGGCCGccccaccgCGuCGGcGGCCGCCGGGg -3'
miRNA:   3'- -UGUCGGUcua-----GC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 121904 0.7 0.642404
Target:  5'- cGCAgGCCGGG-CGCGGgccugaggucgggccUGAgCGCCGGGg -3'
miRNA:   3'- -UGU-CGGUCUaGCGCC---------------ACUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 152805 0.7 0.642404
Target:  5'- cGCAgGCCGGG-CGCGGgccugaggucgggccUGAgCGCCGGGg -3'
miRNA:   3'- -UGU-CGGUCUaGCGCC---------------ACUgGUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.