miRNA display CGI


Results 41 - 60 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 89227 0.73 0.389602
Target:  5'- --gCGCGGCGgcggaggcccgcgccGCCACGgugucGCAGGCGUg -3'
miRNA:   3'- aaaGCGCCGU---------------UGGUGCa----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 25895 0.73 0.403199
Target:  5'- --cCGCGGCGcCCGCGcccagcgccGCGGGCGCGc -3'
miRNA:   3'- aaaGCGCCGUuGGUGCa--------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 100894 0.73 0.403199
Target:  5'- --aCGCGGgGugCGCcgagcgcggGUGCAGGCGCGc -3'
miRNA:   3'- aaaGCGCCgUugGUG---------CACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 35695 0.73 0.411848
Target:  5'- --gCGgGGCGAgggCugGUGCGGGCGCGg -3'
miRNA:   3'- aaaGCgCCGUUg--GugCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 4794 0.73 0.411848
Target:  5'- --gCGgGGCGAgggCugGUGCGGGCGCGg -3'
miRNA:   3'- aaaGCgCCGUUg--GugCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 100481 0.73 0.411848
Target:  5'- --gCGCGGCcGCCcggaGCGcGCAGGCGUAc -3'
miRNA:   3'- aaaGCGCCGuUGG----UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 30406 0.73 0.41973
Target:  5'- --gCGCGGCGGCCuucaggcACGUGaaggucaGGGCGCGg -3'
miRNA:   3'- aaaGCGCCGUUGG-------UGCACg------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 74905 0.73 0.420611
Target:  5'- --gCGCGuccaGGCgCGCGUGCAGGCGCGc -3'
miRNA:   3'- aaaGCGCcg--UUG-GUGCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 7634 0.72 0.429486
Target:  5'- --gCGCGGCGGCCGgG-GUcgGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGUUGGUgCaCG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 38535 0.72 0.429486
Target:  5'- --gCGCGGCGGCCGgG-GUcgGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGUUGGUgCaCG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 14862 0.72 0.43847
Target:  5'- --cCGCGGCcgcccgacgacGGCUggGUGCAGGUGCAc -3'
miRNA:   3'- aaaGCGCCG-----------UUGGugCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 86052 0.72 0.446647
Target:  5'- -cUCGCGGC-GCUACGUGCGaagcaccGGuCGCAg -3'
miRNA:   3'- aaAGCGCCGuUGGUGCACGU-------CC-GCGU- -5'
21382 3' -58 NC_004812.1 + 90318 0.72 0.447561
Target:  5'- --cCGCaGC-ACCGCGUacGCGGGCGCGg -3'
miRNA:   3'- aaaGCGcCGuUGGUGCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 66517 0.72 0.448476
Target:  5'- --gCGCGGCGaacacGCCGCGguaccgcucgcgcucGCAGGCGCu -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGCa--------------CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 156452 0.72 0.46605
Target:  5'- --gCGCGGCgGGCCGCGgGCGcggcGGCGCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCaCGU----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 42 0.72 0.46605
Target:  5'- --gCGCGGCgGGCCGCGgGCGcggcGGCGCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCaCGU----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 30943 0.72 0.46605
Target:  5'- --gCGCGGCgGGCCGCGggcGCGgcGGCGCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCa--CGU--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 129215 0.72 0.475442
Target:  5'- -gUCgGCGGCGGCgGCGccgGCGGaGCGCAc -3'
miRNA:   3'- aaAG-CGCCGUUGgUGCa--CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 152853 0.72 0.475442
Target:  5'- -gUCGcCGGCGccGCCGCGccgcUGCuGGCGCGc -3'
miRNA:   3'- aaAGC-GCCGU--UGGUGC----ACGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 25356 0.72 0.475442
Target:  5'- ---gGCGGCGACCACGggcucGCcGGCGUc -3'
miRNA:   3'- aaagCGCCGUUGGUGCa----CGuCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.