Results 21 - 40 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 5' | -59.3 | NC_004812.1 | + | 145450 | 0.74 | 0.307257 |
Target: 5'- uGGCACCgaCCUACAUucgCCUGGCCGaCGACg -3' miRNA: 3'- -UCGUGG--GGAUGUG---GGACCGGUcGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 117327 | 0.74 | 0.307257 |
Target: 5'- cGCGCCCCcGgACCCcgGGCCccGGCGGCc -3' miRNA: 3'- uCGUGGGGaUgUGGGa-CCGG--UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 88920 | 0.73 | 0.359458 |
Target: 5'- cGCGCCCUgcucggaACCCUGGCCgccGGUGGCg -3' miRNA: 3'- uCGUGGGGaug----UGGGACCGG---UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 49865 | 0.73 | 0.339368 |
Target: 5'- gAGCGCCCCaugACguaguaggccucgucGCCCUcgccGCCAGCAGCa -3' miRNA: 3'- -UCGUGGGGa--UG---------------UGGGAc---CGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 59092 | 0.73 | 0.359458 |
Target: 5'- uGCGCCCCUcgACCgaCUGGCUGGCAAa -3' miRNA: 3'- uCGUGGGGAugUGG--GACCGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 105217 | 0.73 | 0.354749 |
Target: 5'- cGgGCCCCgggcucuucgaaggACACCCgGGCgGGCGACg -3' miRNA: 3'- uCgUGGGGa-------------UGUGGGaCCGgUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 99706 | 0.73 | 0.359458 |
Target: 5'- cGGCGgCgCCUGCGCCCagGGCUGGCcGCa -3' miRNA: 3'- -UCGUgG-GGAUGUGGGa-CCGGUCGuUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 62323 | 0.73 | 0.343931 |
Target: 5'- cGCACCCaggcgcACGCCCgGGCC-GCGGCg -3' miRNA: 3'- uCGUGGGga----UGUGGGaCCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 120458 | 0.73 | 0.335599 |
Target: 5'- cGCACCCCUGCgccgccacggccaACCCgugGGCCuccCAGCg -3' miRNA: 3'- uCGUGGGGAUG-------------UGGGa--CCGGuc-GUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 153584 | 0.72 | 0.378727 |
Target: 5'- gGGCaaccGCCUCUGCggGCCCgacacggccgccugGGCCGGCAACu -3' miRNA: 3'- -UCG----UGGGGAUG--UGGGa-------------CCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 96650 | 0.72 | 0.383652 |
Target: 5'- cGGCGCCgCgcgAC-CCCgugGGCCAGCAGg -3' miRNA: 3'- -UCGUGGgGa--UGuGGGa--CCGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 133659 | 0.72 | 0.375468 |
Target: 5'- cGCACCCCU-CGCCCcgagcgGGCgAGgGACu -3' miRNA: 3'- uCGUGGGGAuGUGGGa-----CCGgUCgUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 13086 | 0.72 | 0.40037 |
Target: 5'- cAGCGCCCCcaugcgcucgUACGCCCgGGCCcGCcuCg -3' miRNA: 3'- -UCGUGGGG----------AUGUGGGaCCGGuCGuuG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 97440 | 0.72 | 0.383652 |
Target: 5'- cGGCAUCaaggccugCCUGCGCCCgucggacgGcGCCAGCGGCa -3' miRNA: 3'- -UCGUGG--------GGAUGUGGGa-------C-CGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 67609 | 0.72 | 0.408902 |
Target: 5'- cGCACUCCUuccaguucaucaGgGCCgUGGCCAGgGACg -3' miRNA: 3'- uCGUGGGGA------------UgUGGgACCGGUCgUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 79377 | 0.72 | 0.408902 |
Target: 5'- cAGCGCCCC-ACACCCccGcGUCGGCcGCg -3' miRNA: 3'- -UCGUGGGGaUGUGGGa-C-CGGUCGuUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 6307 | 0.72 | 0.417546 |
Target: 5'- cGGCGCCCCcggGCACgCggggGGCCccgggcaggaggGGCAGCa -3' miRNA: 3'- -UCGUGGGGa--UGUGgGa---CCGG------------UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 112452 | 0.72 | 0.417546 |
Target: 5'- cGGC-CCCCgaGCGCCCUccGGCCguccGGCGACc -3' miRNA: 3'- -UCGuGGGGa-UGUGGGA--CCGG----UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 87850 | 0.72 | 0.375468 |
Target: 5'- uGUACCUgga-GCCCUGGCaCAGCGACa -3' miRNA: 3'- uCGUGGGgaugUGGGACCG-GUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 142173 | 0.72 | 0.417546 |
Target: 5'- gGGCGCCaUCguugGCGCgCUGGCCGGCGc- -3' miRNA: 3'- -UCGUGG-GGa---UGUGgGACCGGUCGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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