Results 41 - 60 of 457 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21384 | 5' | -55 | NC_004812.1 | + | 130929 | 0.74 | 0.563994 |
Target: 5'- cGCGgacGACGGcGggGAcaGCGCCCGgGCCg -3' miRNA: 3'- aCGU---CUGCCaCuuCU--CGUGGGUgUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 19890 | 0.74 | 0.563994 |
Target: 5'- gGCGcGGCGGcgGggGAcGCggcgGCCCGCGCCg -3' miRNA: 3'- aCGU-CUGCCa-CuuCU-CG----UGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 5421 | 0.74 | 0.563994 |
Target: 5'- cGCGgacGACGGcGggGAcaGCGCCCGgGCCg -3' miRNA: 3'- aCGU---CUGCCaCuuCU--CGUGGGUgUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 2005 | 0.74 | 0.574148 |
Target: 5'- cGCcGGCGGUcgcucGGGGCGCCgACGCCg -3' miRNA: 3'- aCGuCUGCCAcu---UCUCGUGGgUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 127514 | 0.74 | 0.574148 |
Target: 5'- cGCcGGCGGUcgcucGGGGCGCCgACGCCg -3' miRNA: 3'- aCGuCUGCCAcu---UCUCGUGGgUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 110896 | 0.73 | 0.584343 |
Target: 5'- gGCAGGCcGUcccGAuGAGCGCCCgGCGCCg -3' miRNA: 3'- aCGUCUGcCA---CUuCUCGUGGG-UGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 88791 | 0.73 | 0.584343 |
Target: 5'- cUGCuuucGGACGGacGggGGGCugCCGgGCCg -3' miRNA: 3'- -ACG----UCUGCCa-CuuCUCGugGGUgUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 2438 | 0.73 | 0.60483 |
Target: 5'- cGCAGgcGCGGUGcGAGuGCGCCU-CGCCg -3' miRNA: 3'- aCGUC--UGCCAC-UUCuCGUGGGuGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 127946 | 0.73 | 0.60483 |
Target: 5'- cGCAGgcGCGGUGcGAGuGCGCCU-CGCCg -3' miRNA: 3'- aCGUC--UGCCAC-UUCuCGUGGGuGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 18659 | 0.73 | 0.60483 |
Target: 5'- cGCAGACGGccaUGuccacGGCGCCCGcCGCCu -3' miRNA: 3'- aCGUCUGCC---ACuuc--UCGUGGGU-GUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 15013 | 0.73 | 0.60483 |
Target: 5'- uUGCGGACGG-GGcaGGCGCCCAgggGCCg -3' miRNA: 3'- -ACGUCUGCCaCUucUCGUGGGUg--UGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 51702 | 0.73 | 0.60483 |
Target: 5'- cGCGuGCcagGAAGAGCGCCUGCGCCa -3' miRNA: 3'- aCGUcUGccaCUUCUCGUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 82243 | 0.73 | 0.610995 |
Target: 5'- cGCGGGCGG-GAccccgccgcccGCGCCCGCGCCc -3' miRNA: 3'- aCGUCUGCCaCUucu--------CGUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 35281 | 0.73 | 0.615109 |
Target: 5'- gGUAGGCcacgagccgGGUGGGcAGCACCCGCGCg -3' miRNA: 3'- aCGUCUG---------CCACUUcUCGUGGGUGUGg -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 137800 | 0.73 | 0.615109 |
Target: 5'- gGCGGGCGGcGAgggcgccgcGGAGCAggccCCCugGCCc -3' miRNA: 3'- aCGUCUGCCaCU---------UCUCGU----GGGugUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 90287 | 0.73 | 0.615109 |
Target: 5'- cUGCAGcGCGGgcGAcGGGCGCCUggGCGCCg -3' miRNA: 3'- -ACGUC-UGCCa-CUuCUCGUGGG--UGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 15997 | 0.73 | 0.615109 |
Target: 5'- aGCAc-CGGUGcagGAGGGCGCCgGCGCCc -3' miRNA: 3'- aCGUcuGCCAC---UUCUCGUGGgUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 109143 | 0.73 | 0.615109 |
Target: 5'- aGCAGGCgGGUGAcgcGGcuCACCCGCAgCg -3' miRNA: 3'- aCGUCUG-CCACU---UCucGUGGGUGUgG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 106461 | 0.73 | 0.6254 |
Target: 5'- gGCGGACGGaGccGGGCGCCCcccACGCg -3' miRNA: 3'- aCGUCUGCCaCuuCUCGUGGG---UGUGg -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 90684 | 0.73 | 0.6254 |
Target: 5'- gGUAGAUGGgGAGGcgcuugagcAGCACCCACggGCCc -3' miRNA: 3'- aCGUCUGCCaCUUC---------UCGUGGGUG--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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