Results 41 - 60 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 155151 | 0.69 | 0.640228 |
Target: 5'- gGACGCCGGCGUcGcCGCcgUGCccGGCCCu -3' miRNA: 3'- -CUGUGGUUGCA-CaGCG--ACGu-CCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 141542 | 0.69 | 0.650424 |
Target: 5'- gGGCGgCGACGUGUCGCcGCcaguccgccuccAGGuCCCGg -3' miRNA: 3'- -CUGUgGUUGCACAGCGaCG------------UCC-GGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 83504 | 0.69 | 0.650424 |
Target: 5'- cGACgGCCAgGCG-GUgCGCgaGCAGGCCCGg -3' miRNA: 3'- -CUG-UGGU-UGCaCA-GCGa-CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 129366 | 0.69 | 0.670762 |
Target: 5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3' miRNA: 3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 3858 | 0.69 | 0.670762 |
Target: 5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3' miRNA: 3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 138986 | 0.69 | 0.670762 |
Target: 5'- cGGCACCGACGg--CGgaGCgguucgcccGGGCCCGc -3' miRNA: 3'- -CUGUGGUUGCacaGCgaCG---------UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 111555 | 0.69 | 0.679878 |
Target: 5'- uGCACCAGCGg--CGCUGCAuguucggcgugguGaGCCCGg -3' miRNA: 3'- cUGUGGUUGCacaGCGACGU-------------C-CGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 27678 | 0.69 | 0.680889 |
Target: 5'- uGGCGCC-GCGUGcCGCcG-GGGCCCAg -3' miRNA: 3'- -CUGUGGuUGCACaGCGaCgUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 46809 | 0.69 | 0.680889 |
Target: 5'- gGGCAUCGAagauccggGUGaUCGuCUGCGGGCCCc -3' miRNA: 3'- -CUGUGGUUg-------CAC-AGC-GACGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 85810 | 0.69 | 0.680889 |
Target: 5'- gGACGCCGGgccCGUGUCGUgaaGCAGaCCCu -3' miRNA: 3'- -CUGUGGUU---GCACAGCGa--CGUCcGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 153186 | 0.69 | 0.680889 |
Target: 5'- uGGCGCC-GCGUGcCGCcG-GGGCCCAg -3' miRNA: 3'- -CUGUGGuUGCACaGCGaCgUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 83763 | 0.69 | 0.688962 |
Target: 5'- gGACGCCAGCGcgcccaacagCGaCUGCAgcGGCCCGu -3' miRNA: 3'- -CUGUGGUUGCaca-------GC-GACGU--CCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 54418 | 0.69 | 0.690976 |
Target: 5'- aGACGCCGccGgGUGUcgaugggccCGCcGCGGGCCCc -3' miRNA: 3'- -CUGUGGU--UgCACA---------GCGaCGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 96357 | 0.69 | 0.690976 |
Target: 5'- cGGCGCCccGACGg--UGCUGCcgcGGCCCAc -3' miRNA: 3'- -CUGUGG--UUGCacaGCGACGu--CCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 78785 | 0.69 | 0.694997 |
Target: 5'- gGACGCCcuggcgcggggcgugGACGcgGUCGCgaggcgcaGCGGGCCCc -3' miRNA: 3'- -CUGUGG---------------UUGCa-CAGCGa-------CGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 144801 | 0.68 | 0.701014 |
Target: 5'- cACACCGACGUGUCcGUcaUGCcgaucGCCCAc -3' miRNA: 3'- cUGUGGUUGCACAG-CG--ACGuc---CGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 135812 | 0.68 | 0.701014 |
Target: 5'- gGGCGCCGACGcgGgcgCGCcGCAGGUgcuCCAg -3' miRNA: 3'- -CUGUGGUUGCa-Ca--GCGaCGUCCG---GGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 1784 | 0.68 | 0.701014 |
Target: 5'- cGCGCCGACGggagCGCgUGCaucGGGCCCc -3' miRNA: 3'- cUGUGGUUGCaca-GCG-ACG---UCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 127292 | 0.68 | 0.701014 |
Target: 5'- cGCGCCGACGggagCGCgUGCaucGGGCCCc -3' miRNA: 3'- cUGUGGUUGCaca-GCG-ACG---UCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 139422 | 0.68 | 0.710994 |
Target: 5'- cGACACCGggGCG-GcCGgUGCuGGCCCu -3' miRNA: 3'- -CUGUGGU--UGCaCaGCgACGuCCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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