miRNA display CGI


Results 41 - 60 of 729 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 8303 0.75 0.292404
Target:  5'- uGCGCcgGGAGCUcCGCGCGU--ACGCCg -3'
miRNA:   3'- cCGCG--CCUCGA-GCGCGCAgaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 156188 0.75 0.292404
Target:  5'- cGCGCGaGAGCgccgCGCGCGgaaggcCUGCGCgCg -3'
miRNA:   3'- cCGCGC-CUCGa---GCGCGCa-----GAUGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 125287 0.75 0.292404
Target:  5'- cGCGCGaGAGCgccgCGCGCGgaaggcCUGCGCgCg -3'
miRNA:   3'- cCGCGC-CUCGa---GCGCGCa-----GAUGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 14108 0.74 0.298972
Target:  5'- cGCGgGGAGCgcgcCGUGCGUgaACGCCg -3'
miRNA:   3'- cCGCgCCUCGa---GCGCGCAgaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 38596 0.74 0.298972
Target:  5'- gGGCGCGGGGgUCGCGCcgaGUCcGCGgCg -3'
miRNA:   3'- -CCGCGCCUCgAGCGCG---CAGaUGCgGg -5'
21386 3' -60.6 NC_004812.1 + 7695 0.74 0.298972
Target:  5'- gGGCGCGGGGgUCGCGCcgaGUCcGCGgCg -3'
miRNA:   3'- -CCGCGCCUCgAGCGCG---CAGaUGCgGg -5'
21386 3' -60.6 NC_004812.1 + 71945 0.74 0.300299
Target:  5'- cGGCGCGGGGCggcccugccgcgaCGCGCGcCgcgggaggcucacGCGCCCc -3'
miRNA:   3'- -CCGCGCCUCGa------------GCGCGCaGa------------UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 130900 0.74 0.305653
Target:  5'- cGGCGCGGGGCcggGgGCGUCgccgGCCCc -3'
miRNA:   3'- -CCGCGCCUCGag-CgCGCAGaug-CGGG- -5'
21386 3' -60.6 NC_004812.1 + 101991 0.74 0.305653
Target:  5'- cGCGCgGGGGgUCGCGCGacUCgcgGCGCCg -3'
miRNA:   3'- cCGCG-CCUCgAGCGCGC--AGa--UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 5392 0.74 0.305653
Target:  5'- cGGCGCGGGGCcggGgGCGUCgccgGCCCc -3'
miRNA:   3'- -CCGCGCCUCGag-CgCGCAGaug-CGGG- -5'
21386 3' -60.6 NC_004812.1 + 47040 0.74 0.305653
Target:  5'- gGGCaGCGGGGUUUGCGUGcggGCGUCCu -3'
miRNA:   3'- -CCG-CGCCUCGAGCGCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 152405 0.74 0.305653
Target:  5'- cGCGUGGGGCcgggCGcCGCGgggGCGCCCu -3'
miRNA:   3'- cCGCGCCUCGa---GC-GCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 56132 0.74 0.305653
Target:  5'- uGCGCGcuccGGGCggcCGCGCcccUCUACGCCCg -3'
miRNA:   3'- cCGCGC----CUCGa--GCGCGc--AGAUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 124854 0.74 0.305653
Target:  5'- uGGCGUGGGGCgggCGcCGCGcCccCGCCCc -3'
miRNA:   3'- -CCGCGCCUCGa--GC-GCGCaGauGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 121504 0.74 0.305653
Target:  5'- cGCGUGGGGCcgggCGcCGCGgggGCGCCCu -3'
miRNA:   3'- cCGCGCCUCGa---GC-GCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 117994 0.74 0.310397
Target:  5'- cGGCGCGGAGacccccgccgcggaCUCgGCGCGacccCcGCGCCCg -3'
miRNA:   3'- -CCGCGCCUC--------------GAG-CGCGCa---GaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 148895 0.74 0.310397
Target:  5'- cGGCGCGGAGacccccgccgcggaCUCgGCGCGacccCcGCGCCCg -3'
miRNA:   3'- -CCGCGCCUC--------------GAG-CGCGCa---GaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 85029 0.74 0.311763
Target:  5'- cGCGCGGGGCUCGUGuCGcugaacuUCcucguggccgcgUGCGCCCc -3'
miRNA:   3'- cCGCGCCUCGAGCGC-GC-------AG------------AUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 93539 0.74 0.312447
Target:  5'- gGGCGCGGGuGCggcggCGUGcCGUCc-CGCCCg -3'
miRNA:   3'- -CCGCGCCU-CGa----GCGC-GCAGauGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 150931 0.74 0.312447
Target:  5'- cGCGCGGcGUUCGCGCaggacUCcgACGCCCc -3'
miRNA:   3'- cCGCGCCuCGAGCGCGc----AGa-UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.