miRNA display CGI


Results 1 - 20 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 5' -53.9 NC_004812.1 + 50915 0.66 0.948215
Target:  5'- cCGGCCCCGccacccGCCUUCgGGGCcccGGCgUACg -3'
miRNA:   3'- aGCCGGGGU------UGGAGGaCUUG---UUG-AUG- -5'
21387 5' -53.9 NC_004812.1 + 42515 0.66 0.96017
Target:  5'- cUCGGCgCCGuug-CC-GAGCAGCUGCu -3'
miRNA:   3'- -AGCCGgGGUuggaGGaCUUGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 55177 0.66 0.963691
Target:  5'- cCGGCgccCCCGGCCcCCaUGAugAACcGCg -3'
miRNA:   3'- aGCCG---GGGUUGGaGG-ACUugUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 21934 0.66 0.943753
Target:  5'- gCGGCUCCGccccCCUCCUcgcGAGCGccucCUGCa -3'
miRNA:   3'- aGCCGGGGUu---GGAGGA---CUUGUu---GAUG- -5'
21387 5' -53.9 NC_004812.1 + 153163 0.66 0.948215
Target:  5'- cCGGgCCCGACCcCCgcGGCGGCUGg -3'
miRNA:   3'- aGCCgGGGUUGGaGGacUUGUUGAUg -5'
21387 5' -53.9 NC_004812.1 + 84617 0.66 0.95642
Target:  5'- aCGGCCCU-AUCUCCUcGAcccugGCGACgccGCg -3'
miRNA:   3'- aGCCGGGGuUGGAGGA-CU-----UGUUGa--UG- -5'
21387 5' -53.9 NC_004812.1 + 134717 0.66 0.95642
Target:  5'- cUCGGCCUCAGCgaCCcGAcACGAUUGa -3'
miRNA:   3'- -AGCCGGGGUUGgaGGaCU-UGUUGAUg -5'
21387 5' -53.9 NC_004812.1 + 30945 0.66 0.943753
Target:  5'- gCGGCCCgaGGCCUCCccgagGGuCAGgUACg -3'
miRNA:   3'- aGCCGGGg-UUGGAGGa----CUuGUUgAUG- -5'
21387 5' -53.9 NC_004812.1 + 153598 0.66 0.952436
Target:  5'- gCGGgCCCGACaCggccgCCUGGgccgGCAACUGg -3'
miRNA:   3'- aGCCgGGGUUG-Ga----GGACU----UGUUGAUg -5'
21387 5' -53.9 NC_004812.1 + 137894 0.66 0.948215
Target:  5'- -gGcGCCCCAGCg-CCgcgGAGCuACUGCg -3'
miRNA:   3'- agC-CGGGGUUGgaGGa--CUUGuUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 112562 0.66 0.943753
Target:  5'- cUCGGCCUgGACCugUCCgacAGCGACUuCg -3'
miRNA:   3'- -AGCCGGGgUUGG--AGGac-UUGUUGAuG- -5'
21387 5' -53.9 NC_004812.1 + 83837 0.66 0.943753
Target:  5'- -gGGCgCCCGGCCgucUCCgggggGAGCGGCgggggGCg -3'
miRNA:   3'- agCCG-GGGUUGG---AGGa----CUUGUUGa----UG- -5'
21387 5' -53.9 NC_004812.1 + 130203 0.66 0.95642
Target:  5'- gCGcGCCCCAgaGCC-CC-GGGCGGCUGu -3'
miRNA:   3'- aGC-CGGGGU--UGGaGGaCUUGUUGAUg -5'
21387 5' -53.9 NC_004812.1 + 113617 0.66 0.95642
Target:  5'- gCGGUCCUGGagaaCCUGAGCAcccgGCUGCg -3'
miRNA:   3'- aGCCGGGGUUgga-GGACUUGU----UGAUG- -5'
21387 5' -53.9 NC_004812.1 + 91008 0.66 0.943753
Target:  5'- gUCGGCgCagucgccguCGGCCUCC--GACAGCUGCc -3'
miRNA:   3'- -AGCCGgG---------GUUGGAGGacUUGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 90136 0.66 0.963691
Target:  5'- cCGGCCaaCAGCCgcgUCCUGGACGcgGCgGCc -3'
miRNA:   3'- aGCCGGg-GUUGG---AGGACUUGU--UGaUG- -5'
21387 5' -53.9 NC_004812.1 + 150990 0.66 0.963691
Target:  5'- cCGGCCCCcgagccgccuccGGCCcCCUGGGgGACc-- -3'
miRNA:   3'- aGCCGGGG------------UUGGaGGACUUgUUGaug -5'
21387 5' -53.9 NC_004812.1 + 64303 0.66 0.948215
Target:  5'- -aGGCCCaCAACCUCUgcuuCAGC-ACg -3'
miRNA:   3'- agCCGGG-GUUGGAGGacuuGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 83988 0.66 0.96017
Target:  5'- gCGGCCCgGcCCUCCUuGGGgGGCg-- -3'
miRNA:   3'- aGCCGGGgUuGGAGGA-CUUgUUGaug -5'
21387 5' -53.9 NC_004812.1 + 105218 0.66 0.95642
Target:  5'- -gGGCCCCGGgCUCUUcGAAgGACa-- -3'
miRNA:   3'- agCCGGGGUUgGAGGA-CUUgUUGaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.