miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 5' -53.9 NC_004812.1 + 596 0.68 0.885632
Target:  5'- cCGGCCCCGGgcguccCCUCCcccgcgccgcGAGCAcgcggGCUGCa -3'
miRNA:   3'- aGCCGGGGUU------GGAGGa---------CUUGU-----UGAUG- -5'
21387 5' -53.9 NC_004812.1 + 693 0.67 0.917759
Target:  5'- gCGG-CCCGGCCUCCUcGGcgcgGCAGCccggGCg -3'
miRNA:   3'- aGCCgGGGUUGGAGGA-CU----UGUUGa---UG- -5'
21387 5' -53.9 NC_004812.1 + 1225 0.67 0.934096
Target:  5'- cCGGCCCCcgGGgUUCCUGGcggACGGCUu- -3'
miRNA:   3'- aGCCGGGG--UUgGAGGACU---UGUUGAug -5'
21387 5' -53.9 NC_004812.1 + 1731 0.68 0.883515
Target:  5'- cCGGCCCCGcgcGCCUCCgcggcccGAgcccgcgcccccucGCAGCcGCg -3'
miRNA:   3'- aGCCGGGGU---UGGAGGa------CU--------------UGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 4132 0.71 0.767468
Target:  5'- cUCGGCCCCcGCC-CCgccGAGCAGggGCc -3'
miRNA:   3'- -AGCCGGGGuUGGaGGa--CUUGUUgaUG- -5'
21387 5' -53.9 NC_004812.1 + 4695 0.66 0.95642
Target:  5'- gCGcGCCCCAgaGCC-CC-GGGCGGCUGu -3'
miRNA:   3'- aGC-CGGGGU--UGGaGGaCUUGUUGAUg -5'
21387 5' -53.9 NC_004812.1 + 4830 0.67 0.934603
Target:  5'- gCGGCCCCGACCcagcccccugcggggCCgggGAGgGGCcGCg -3'
miRNA:   3'- aGCCGGGGUUGGa--------------GGa--CUUgUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 5789 0.67 0.934096
Target:  5'- gUCGGCgCCC-GCCUCgggCUGcGgGGCUGCg -3'
miRNA:   3'- -AGCCG-GGGuUGGAG---GACuUgUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 8414 0.68 0.911818
Target:  5'- cUCGGCCCCGGCCguaCCgGAGgCcGCcGCc -3'
miRNA:   3'- -AGCCGGGGUUGGa--GGaCUU-GuUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 8621 0.67 0.934096
Target:  5'- cUCGGCCCCGccGCCcggcgCCaUGAGCAcggaGCgccGCg -3'
miRNA:   3'- -AGCCGGGGU--UGGa----GG-ACUUGU----UGa--UG- -5'
21387 5' -53.9 NC_004812.1 + 8749 0.74 0.594012
Target:  5'- aCGGCCCCGACCcCCcaGGCAGCcGCg -3'
miRNA:   3'- aGCCGGGGUUGGaGGacUUGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 10295 0.7 0.795676
Target:  5'- cCGGCgCCGACg-CCUGAGCGccgucuGCUGCc -3'
miRNA:   3'- aGCCGgGGUUGgaGGACUUGU------UGAUG- -5'
21387 5' -53.9 NC_004812.1 + 10740 0.69 0.855742
Target:  5'- gCGGUCCUcGCCUCCUGGGgAuggGCg -3'
miRNA:   3'- aGCCGGGGuUGGAGGACUUgUugaUG- -5'
21387 5' -53.9 NC_004812.1 + 12732 0.69 0.839516
Target:  5'- aCGGCgCCCccucgaacGCCUCCccGAACAGCUcGCg -3'
miRNA:   3'- aGCCG-GGGu-------UGGAGGa-CUUGUUGA-UG- -5'
21387 5' -53.9 NC_004812.1 + 13978 0.68 0.905633
Target:  5'- aCGGCCCCGGCggCCagGAGCGAgUccgACa -3'
miRNA:   3'- aGCCGGGGUUGgaGGa-CUUGUUgA---UG- -5'
21387 5' -53.9 NC_004812.1 + 14216 0.66 0.96017
Target:  5'- cUCGGCCCCGcCC-CCg--GCGGCcACg -3'
miRNA:   3'- -AGCCGGGGUuGGaGGacuUGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 16244 0.73 0.63561
Target:  5'- cCGGCCaggaCGACCUCC-GGACAgACUAUg -3'
miRNA:   3'- aGCCGGg---GUUGGAGGaCUUGU-UGAUG- -5'
21387 5' -53.9 NC_004812.1 + 17002 0.74 0.583666
Target:  5'- cCGGaCCaCCGGCUgcacuucgUCCUGGACGGCUGCc -3'
miRNA:   3'- aGCC-GG-GGUUGG--------AGGACUUGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 17449 0.71 0.777008
Target:  5'- aUGGCCCgCuACCUCCUGGcgaACAACc-- -3'
miRNA:   3'- aGCCGGG-GuUGGAGGACU---UGUUGaug -5'
21387 5' -53.9 NC_004812.1 + 17507 0.67 0.928898
Target:  5'- cCGGCCCCAGCCgcgUCUuu-CGGCUc- -3'
miRNA:   3'- aGCCGGGGUUGGa--GGAcuuGUUGAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.