miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 5' -53.9 NC_004812.1 + 134364 1.11 0.003215
Target:  5'- gUCGGCCCCAACCUCCUGAACAACUACg -3'
miRNA:   3'- -AGCCGGGGUUGGAGGACUUGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 83095 0.78 0.39189
Target:  5'- cCGGCCaCCGGCCUCCUGuuCGGC-ACg -3'
miRNA:   3'- aGCCGG-GGUUGGAGGACuuGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 34757 0.77 0.454706
Target:  5'- gCGGCCCCGggGCCUCggggUGGAuCAGCUGCg -3'
miRNA:   3'- aGCCGGGGU--UGGAGg---ACUU-GUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 137442 0.77 0.454706
Target:  5'- aCGGCCCCGaggacAUCUgCCUGGGCGACUucgGCg -3'
miRNA:   3'- aGCCGGGGU-----UGGA-GGACUUGUUGA---UG- -5'
21387 5' -53.9 NC_004812.1 + 103188 0.76 0.492954
Target:  5'- gCGGCCCCGGgCUCCUcGGugGccgcGCUGCg -3'
miRNA:   3'- aGCCGGGGUUgGAGGA-CUugU----UGAUG- -5'
21387 5' -53.9 NC_004812.1 + 88977 0.76 0.503731
Target:  5'- -gGGCCCCAGCCgucccuggccacggcCCUGAugAACUGg -3'
miRNA:   3'- agCCGGGGUUGGa--------------GGACUugUUGAUg -5'
21387 5' -53.9 NC_004812.1 + 128734 0.75 0.532612
Target:  5'- -gGGCCCaccaccCAGCUUCCgaGAGCGACUGCg -3'
miRNA:   3'- agCCGGG------GUUGGAGGa-CUUGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 78333 0.75 0.563089
Target:  5'- cCGGCCUCgGGCCUCCUGGACcuAACg-- -3'
miRNA:   3'- aGCCGGGG-UUGGAGGACUUG--UUGaug -5'
21387 5' -53.9 NC_004812.1 + 74770 0.74 0.573356
Target:  5'- gCGGCCCCGaggGCCUCCg--GCGACUuccACg -3'
miRNA:   3'- aGCCGGGGU---UGGAGGacuUGUUGA---UG- -5'
21387 5' -53.9 NC_004812.1 + 74844 0.74 0.583666
Target:  5'- cUCGGCCCCGcgGCCUCCagcGAGCGccGCaggGCg -3'
miRNA:   3'- -AGCCGGGGU--UGGAGGa--CUUGU--UGa--UG- -5'
21387 5' -53.9 NC_004812.1 + 17002 0.74 0.583666
Target:  5'- cCGGaCCaCCGGCUgcacuucgUCCUGGACGGCUGCc -3'
miRNA:   3'- aGCC-GG-GGUUGG--------AGGACUUGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 8749 0.74 0.594012
Target:  5'- aCGGCCCCGACCcCCcaGGCAGCcGCg -3'
miRNA:   3'- aGCCGGGGUUGGaGGacUUGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 103544 0.74 0.604387
Target:  5'- gCGGCCCUugagcGCCgCCUGGcgguGCAGCUGCc -3'
miRNA:   3'- aGCCGGGGu----UGGaGGACU----UGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 48236 0.74 0.614784
Target:  5'- gCGGCCCagGGCCUCCUGcagcGCGGCgACg -3'
miRNA:   3'- aGCCGGGg-UUGGAGGACu---UGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 154804 0.74 0.625194
Target:  5'- gCGGCCCCGACgUCCgccau-GCUGCg -3'
miRNA:   3'- aGCCGGGGUUGgAGGacuuguUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 123903 0.74 0.625194
Target:  5'- gCGGCCCCGACgUCCgccau-GCUGCg -3'
miRNA:   3'- aGCCGGGGUUGgAGGacuuguUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 74961 0.73 0.63561
Target:  5'- gUGGCCaCgAGCCUCCUGcugaucAGCAugUACg -3'
miRNA:   3'- aGCCGG-GgUUGGAGGAC------UUGUugAUG- -5'
21387 5' -53.9 NC_004812.1 + 16244 0.73 0.63561
Target:  5'- cCGGCCaggaCGACCUCC-GGACAgACUAUg -3'
miRNA:   3'- aGCCGGg---GUUGGAGGaCUUGU-UGAUG- -5'
21387 5' -53.9 NC_004812.1 + 143557 0.73 0.646023
Target:  5'- gCGGCCCUGGCgCgCCUGGGCGACg-- -3'
miRNA:   3'- aGCCGGGGUUG-GaGGACUUGUUGaug -5'
21387 5' -53.9 NC_004812.1 + 87691 0.73 0.666805
Target:  5'- gUCGGCCCCA---UCCUGGcccGCAGCgGCg -3'
miRNA:   3'- -AGCCGGGGUuggAGGACU---UGUUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.