miRNA display CGI


Results 41 - 60 of 252 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 58171 0.72 0.298568
Target:  5'- cGCCCCCGCGCcuGCCgccccgCGGCCGccgCa- -3'
miRNA:   3'- -CGGGGGCGCG--UGGa-----GCCGGCacaGca -5'
21388 3' -63.7 NC_004812.1 + 21003 0.71 0.305139
Target:  5'- cGUCgCCGcCGCGCCUCGGCCGcgGggGUg -3'
miRNA:   3'- -CGGgGGC-GCGUGGAGCCGGCa-CagCA- -5'
21388 3' -63.7 NC_004812.1 + 84325 0.71 0.305139
Target:  5'- cGCCCCgGCccGCACCUCGGCCa------ -3'
miRNA:   3'- -CGGGGgCG--CGUGGAGCCGGcacagca -5'
21388 3' -63.7 NC_004812.1 + 112453 0.71 0.31182
Target:  5'- gGCCCCCGaGCGCCcucCGGCCGUccggCGa -3'
miRNA:   3'- -CGGGGGCgCGUGGa--GCCGGCAca--GCa -5'
21388 3' -63.7 NC_004812.1 + 83236 0.71 0.325513
Target:  5'- gGCCCCCGgGCGCUgguggCGGUuagCGUGcUCGg -3'
miRNA:   3'- -CGGGGGCgCGUGGa----GCCG---GCAC-AGCa -5'
21388 3' -63.7 NC_004812.1 + 37127 0.71 0.325513
Target:  5'- cGCCCCUGC-CGCCgcggccccgCGGCCGUcUCGc -3'
miRNA:   3'- -CGGGGGCGcGUGGa--------GCCGGCAcAGCa -5'
21388 3' -63.7 NC_004812.1 + 44383 0.71 0.325513
Target:  5'- cGCCCCCGCGUccgGCCg-GGCCGaagGggCGUg -3'
miRNA:   3'- -CGGGGGCGCG---UGGagCCGGCa--Ca-GCA- -5'
21388 3' -63.7 NC_004812.1 + 101106 0.71 0.325513
Target:  5'- uGCUgCCG-GCgACCUucgCGGCCGUGUCGa -3'
miRNA:   3'- -CGGgGGCgCG-UGGA---GCCGGCACAGCa -5'
21388 3' -63.7 NC_004812.1 + 4203 0.71 0.325513
Target:  5'- cGCCCCCGCgGCGCC-CGGCCccacgCGc -3'
miRNA:   3'- -CGGGGGCG-CGUGGaGCCGGcaca-GCa -5'
21388 3' -63.7 NC_004812.1 + 6226 0.71 0.325513
Target:  5'- cGCCCCUGC-CGCCgcggccccgCGGCCGUcUCGc -3'
miRNA:   3'- -CGGGGGCGcGUGGa--------GCCGGCAcAGCa -5'
21388 3' -63.7 NC_004812.1 + 38956 0.71 0.325513
Target:  5'- cUCCCCGUaggccacggGCACgUCGGCCuccGUGUCGg -3'
miRNA:   3'- cGGGGGCG---------CGUGgAGCCGG---CACAGCa -5'
21388 3' -63.7 NC_004812.1 + 35104 0.71 0.325513
Target:  5'- cGCCCCCGCgGCGCC-CGGCCccacgCGc -3'
miRNA:   3'- -CGGGGGCG-CGUGGaGCCGGcaca-GCa -5'
21388 3' -63.7 NC_004812.1 + 9764 0.71 0.332525
Target:  5'- gGCCCgCgGCGCGCCggCGGCCGcgcgggUGUCc- -3'
miRNA:   3'- -CGGG-GgCGCGUGGa-GCCGGC------ACAGca -5'
21388 3' -63.7 NC_004812.1 + 80981 0.71 0.332525
Target:  5'- cGCCgCgGCGCGCUggUCGGUCGUGcUCGc -3'
miRNA:   3'- -CGGgGgCGCGUGG--AGCCGGCAC-AGCa -5'
21388 3' -63.7 NC_004812.1 + 16487 0.71 0.332525
Target:  5'- cGCCCCCGUGUccGCCacCGGCCGgggGgcgCGg -3'
miRNA:   3'- -CGGGGGCGCG--UGGa-GCCGGCa--Ca--GCa -5'
21388 3' -63.7 NC_004812.1 + 21320 0.71 0.339648
Target:  5'- aGCgUCC-CGCAaagaCUCGGCCGUGUCu- -3'
miRNA:   3'- -CGgGGGcGCGUg---GAGCCGGCACAGca -5'
21388 3' -63.7 NC_004812.1 + 106868 0.71 0.339648
Target:  5'- gGCCCCCGcCGCgACCccgaccccgUCGGCCGUccggCGUc -3'
miRNA:   3'- -CGGGGGC-GCG-UGG---------AGCCGGCAca--GCA- -5'
21388 3' -63.7 NC_004812.1 + 19121 0.71 0.339648
Target:  5'- gGCCCCCGC-CAgCUCGG-CGUGggCGg -3'
miRNA:   3'- -CGGGGGCGcGUgGAGCCgGCACa-GCa -5'
21388 3' -63.7 NC_004812.1 + 62469 0.7 0.346881
Target:  5'- gGCCCaggcgCGCGCGCCUCugGGCCGgcgCGg -3'
miRNA:   3'- -CGGGg----GCGCGUGGAG--CCGGCacaGCa -5'
21388 3' -63.7 NC_004812.1 + 126533 0.7 0.346881
Target:  5'- cGCCCCCGCGaggGCC-CGGCCGcccgCGc -3'
miRNA:   3'- -CGGGGGCGCg--UGGaGCCGGCaca-GCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.