miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 5' -58.6 NC_004812.1 + 31810 0.66 0.829889
Target:  5'- ----cGCCCCUUGGUGGCGUaguggugcCGCGg- -3'
miRNA:   3'- cgcaaCGGGGGAUCGUCGCA--------GCGCac -5'
21389 5' -58.6 NC_004812.1 + 16837 0.66 0.829889
Target:  5'- gGCGgccGCCgCCCUuaGGCGcGCGgUCGCGg- -3'
miRNA:   3'- -CGCaa-CGG-GGGA--UCGU-CGC-AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 47017 0.66 0.829889
Target:  5'- gGCGccaugGCCaCCCgauagacgGGCAGCGggguUUGCGUGc -3'
miRNA:   3'- -CGCaa---CGG-GGGa-------UCGUCGC----AGCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 19112 0.66 0.829889
Target:  5'- cGCGggccagGCCCCCgc-CAGC-UCgGCGUGg -3'
miRNA:   3'- -CGCaa----CGGGGGaucGUCGcAG-CGCAC- -5'
21389 5' -58.6 NC_004812.1 + 100889 0.66 0.829889
Target:  5'- gGCGccgcgGCCCCCgaGGCGGgG-CGCGg- -3'
miRNA:   3'- -CGCaa---CGGGGGa-UCGUCgCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 109286 0.66 0.829889
Target:  5'- cCGUUGCUCgcgcuugCUGGCGGUGUCGCc-- -3'
miRNA:   3'- cGCAACGGGg------GAUCGUCGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 125773 0.66 0.829889
Target:  5'- gGCGc-GCCCCCgGGCGGCGccUgGCGc- -3'
miRNA:   3'- -CGCaaCGGGGGaUCGUCGC--AgCGCac -5'
21389 5' -58.6 NC_004812.1 + 58702 0.66 0.829889
Target:  5'- gGC-UUGCCgUUggGGaaCAGCGUCGCGUGg -3'
miRNA:   3'- -CGcAACGGgGGa-UC--GUCGCAGCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 20008 0.66 0.829889
Target:  5'- cGCGgcGCCgUCUccGCGcGCGUCGCGg- -3'
miRNA:   3'- -CGCaaCGGgGGAu-CGU-CGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 56240 0.66 0.821575
Target:  5'- ----cGCCCCCcGGCGGCGggCGCc-- -3'
miRNA:   3'- cgcaaCGGGGGaUCGUCGCa-GCGcac -5'
21389 5' -58.6 NC_004812.1 + 97200 0.66 0.821575
Target:  5'- gGCGggGCUcaUCCUGGCGGUGccacgcgcUGCGUGg -3'
miRNA:   3'- -CGCaaCGG--GGGAUCGUCGCa-------GCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 77356 0.66 0.821575
Target:  5'- ----aGCCCCUggcccGCGGCGUCGCc-- -3'
miRNA:   3'- cgcaaCGGGGGau---CGUCGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 3832 0.66 0.818203
Target:  5'- cGCGgagGUCCCCgcgcaggcgcaugAGCAccagcGCGUCGCGc- -3'
miRNA:   3'- -CGCaa-CGGGGGa------------UCGU-----CGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 129340 0.66 0.818203
Target:  5'- cGCGgagGUCCCCgcgcaggcgcaugAGCAccagcGCGUCGCGc- -3'
miRNA:   3'- -CGCaa-CGGGGGa------------UCGU-----CGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 126424 0.66 0.813096
Target:  5'- aGCugUGCCCCCcaGGCAGCcgcgCGCGg- -3'
miRNA:   3'- -CGcaACGGGGGa-UCGUCGca--GCGCac -5'
21389 5' -58.6 NC_004812.1 + 127926 0.66 0.813096
Target:  5'- cGCGgccaGCCCCC-AGCGcGCGcaggCGCGg- -3'
miRNA:   3'- -CGCaa--CGGGGGaUCGU-CGCa---GCGCac -5'
21389 5' -58.6 NC_004812.1 + 112810 0.66 0.813096
Target:  5'- gGCGUguggGCgCgCCUcggaaGGCGGCGUCgGCGUu -3'
miRNA:   3'- -CGCAa---CGgG-GGA-----UCGUCGCAG-CGCAc -5'
21389 5' -58.6 NC_004812.1 + 101825 0.66 0.813096
Target:  5'- cGCGgcGCCCCCgcuaggucGGCcacgAGCGcCGcCGUGu -3'
miRNA:   3'- -CGCaaCGGGGGa-------UCG----UCGCaGC-GCAC- -5'
21389 5' -58.6 NC_004812.1 + 131476 0.66 0.813096
Target:  5'- -gGUggGCUUaaaUAGCGGCGUCGCGUc -3'
miRNA:   3'- cgCAa-CGGGgg-AUCGUCGCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 2418 0.66 0.813096
Target:  5'- cGCGgccaGCCCCC-AGCGcGCGcaggCGCGg- -3'
miRNA:   3'- -CGCaa--CGGGGGaUCGU-CGCa---GCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.