Results 1 - 20 of 98 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 31810 | 0.66 | 0.829889 |
Target: 5'- ----cGCCCCUUGGUGGCGUaguggugcCGCGg- -3' miRNA: 3'- cgcaaCGGGGGAUCGUCGCA--------GCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 107421 | 0.66 | 0.78674 |
Target: 5'- uGCGgccagGCCCaCCggccgcgcGGCGGcCGUCGCGg- -3' miRNA: 3'- -CGCaa---CGGG-GGa-------UCGUC-GCAGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 101825 | 0.66 | 0.813096 |
Target: 5'- cGCGgcGCCCCCgcuaggucGGCcacgAGCGcCGcCGUGu -3' miRNA: 3'- -CGCaaCGGGGGa-------UCG----UCGCaGC-GCAC- -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 112810 | 0.66 | 0.813096 |
Target: 5'- gGCGUguggGCgCgCCUcggaaGGCGGCGUCgGCGUu -3' miRNA: 3'- -CGCAa---CGgG-GGA-----UCGUCGCAG-CGCAc -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 127926 | 0.66 | 0.813096 |
Target: 5'- cGCGgccaGCCCCC-AGCGcGCGcaggCGCGg- -3' miRNA: 3'- -CGCaa--CGGGGGaUCGU-CGCa---GCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 129340 | 0.66 | 0.818203 |
Target: 5'- cGCGgagGUCCCCgcgcaggcgcaugAGCAccagcGCGUCGCGc- -3' miRNA: 3'- -CGCaa-CGGGGGa------------UCGU-----CGCAGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 77356 | 0.66 | 0.821575 |
Target: 5'- ----aGCCCCUggcccGCGGCGUCGCc-- -3' miRNA: 3'- cgcaaCGGGGGau---CGUCGCAGCGcac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 97200 | 0.66 | 0.821575 |
Target: 5'- gGCGggGCUcaUCCUGGCGGUGccacgcgcUGCGUGg -3' miRNA: 3'- -CGCaaCGG--GGGAUCGUCGCa-------GCGCAC- -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 16837 | 0.66 | 0.829889 |
Target: 5'- gGCGgccGCCgCCCUuaGGCGcGCGgUCGCGg- -3' miRNA: 3'- -CGCaa-CGG-GGGA--UCGU-CGC-AGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 109286 | 0.66 | 0.829889 |
Target: 5'- cCGUUGCUCgcgcuugCUGGCGGUGUCGCc-- -3' miRNA: 3'- cGCAACGGGg------GAUCGUCGCAGCGcac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 89944 | 0.66 | 0.804458 |
Target: 5'- aCGggGCCCgCgAGCGGCGgCGCGc- -3' miRNA: 3'- cGCaaCGGGgGaUCGUCGCaGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 58702 | 0.66 | 0.829889 |
Target: 5'- gGC-UUGCCgUUggGGaaCAGCGUCGCGUGg -3' miRNA: 3'- -CGcAACGGgGGa-UC--GUCGCAGCGCAC- -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 138279 | 0.66 | 0.78674 |
Target: 5'- cGCGccGCgCCCUgcgGGCGGUGgUCGCGg- -3' miRNA: 3'- -CGCaaCGgGGGA---UCGUCGC-AGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 20008 | 0.66 | 0.829889 |
Target: 5'- cGCGgcGCCgUCUccGCGcGCGUCGCGg- -3' miRNA: 3'- -CGCaaCGGgGGAu-CGU-CGCAGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 68866 | 0.66 | 0.78674 |
Target: 5'- gGCGUU-CCCCC-GGCGgGCGUCGUu-- -3' miRNA: 3'- -CGCAAcGGGGGaUCGU-CGCAGCGcac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 111652 | 0.66 | 0.804458 |
Target: 5'- uGCGc-GCCCCCU--CGGCGcUCGUGUa -3' miRNA: 3'- -CGCaaCGGGGGAucGUCGC-AGCGCAc -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 126424 | 0.66 | 0.813096 |
Target: 5'- aGCugUGCCCCCcaGGCAGCcgcgCGCGg- -3' miRNA: 3'- -CGcaACGGGGGa-UCGUCGca--GCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 80733 | 0.66 | 0.804458 |
Target: 5'- cGCGacccUGgCCCUggaGGCGGCGuUCGCGUu -3' miRNA: 3'- -CGCa---ACgGGGGa--UCGUCGC-AGCGCAc -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 2418 | 0.66 | 0.813096 |
Target: 5'- cGCGgccaGCCCCC-AGCGcGCGcaggCGCGg- -3' miRNA: 3'- -CGCaa--CGGGGGaUCGU-CGCa---GCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 47092 | 0.66 | 0.79567 |
Target: 5'- gGCGccucgGCCCCC-GGCucCGUCGCGg- -3' miRNA: 3'- -CGCaa---CGGGGGaUCGucGCAGCGCac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home