miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 5' -58.6 NC_004812.1 + 125773 0.66 0.829889
Target:  5'- gGCGc-GCCCCCgGGCGGCGccUgGCGc- -3'
miRNA:   3'- -CGCaaCGGGGGaUCGUCGC--AgCGCac -5'
21389 5' -58.6 NC_004812.1 + 20008 0.66 0.829889
Target:  5'- cGCGgcGCCgUCUccGCGcGCGUCGCGg- -3'
miRNA:   3'- -CGCaaCGGgGGAu-CGU-CGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 58702 0.66 0.829889
Target:  5'- gGC-UUGCCgUUggGGaaCAGCGUCGCGUGg -3'
miRNA:   3'- -CGcAACGGgGGa-UC--GUCGCAGCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 89944 0.66 0.804458
Target:  5'- aCGggGCCCgCgAGCGGCGgCGCGc- -3'
miRNA:   3'- cGCaaCGGGgGaUCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 126424 0.66 0.813096
Target:  5'- aGCugUGCCCCCcaGGCAGCcgcgCGCGg- -3'
miRNA:   3'- -CGcaACGGGGGa-UCGUCGca--GCGCac -5'
21389 5' -58.6 NC_004812.1 + 31810 0.66 0.829889
Target:  5'- ----cGCCCCUUGGUGGCGUaguggugcCGCGg- -3'
miRNA:   3'- cgcaaCGGGGGAUCGUCGCA--------GCGCac -5'
21389 5' -58.6 NC_004812.1 + 19112 0.66 0.829889
Target:  5'- cGCGggccagGCCCCCgc-CAGC-UCgGCGUGg -3'
miRNA:   3'- -CGCaa----CGGGGGaucGUCGcAG-CGCAC- -5'
21389 5' -58.6 NC_004812.1 + 148014 0.67 0.740249
Target:  5'- gGCGcgGCCUCCgGGCGGCG-CGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGaUCGUCGCaGCGcac -5'
21389 5' -58.6 NC_004812.1 + 1228 0.67 0.768486
Target:  5'- cGCGgggGCuccuCCCCgcccgGGCGGCGcCGCGg- -3'
miRNA:   3'- -CGCaa-CG----GGGGa----UCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 104929 0.67 0.768486
Target:  5'- cGCGguaccgagGCCCCCUuuggauCGGgGUCGCGg- -3'
miRNA:   3'- -CGCaa------CGGGGGAuc----GUCgCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 137818 0.67 0.758242
Target:  5'- cGCGgagcagGCCCCCUGGCcccgggagguccuGGCGcUgGCGa- -3'
miRNA:   3'- -CGCaa----CGGGGGAUCG-------------UCGC-AgCGCac -5'
21389 5' -58.6 NC_004812.1 + 137012 0.67 0.730644
Target:  5'- gGCGUggGCCCgCCUGGCGGCGaUC-Ca-- -3'
miRNA:   3'- -CGCAa-CGGG-GGAUCGUCGC-AGcGcac -5'
21389 5' -58.6 NC_004812.1 + 59248 0.67 0.759179
Target:  5'- cGCGgcgaGCUgCUUGGCGGCGgugCGCGg- -3'
miRNA:   3'- -CGCaa--CGGgGGAUCGUCGCa--GCGCac -5'
21389 5' -58.6 NC_004812.1 + 44338 0.67 0.740249
Target:  5'- gGCGcgGCCCag-AGCGGCG-CGCGg- -3'
miRNA:   3'- -CGCaaCGGGggaUCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 117113 0.67 0.740249
Target:  5'- gGCGcgGCCUCCgGGCGGCG-CGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGaUCGUCGCaGCGcac -5'
21389 5' -58.6 NC_004812.1 + 36581 0.67 0.740249
Target:  5'- aCGUUGCCgCggGGCuGCGUgaGCGUGa -3'
miRNA:   3'- cGCAACGGgGgaUCGuCGCAg-CGCAC- -5'
21389 5' -58.6 NC_004812.1 + 90798 0.67 0.740249
Target:  5'- cGgGgaGCCaguccacggCCUGGCGGCGUCGUGg- -3'
miRNA:   3'- -CgCaaCGGg--------GGAUCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 137961 0.67 0.749764
Target:  5'- cGCGgcgGCCCCUcgucggGGCGGgGUCGgGg- -3'
miRNA:   3'- -CGCaa-CGGGGGa-----UCGUCgCAGCgCac -5'
21389 5' -58.6 NC_004812.1 + 32567 0.67 0.762915
Target:  5'- cGCG--GCCCCCcagcacacgcgcagGGCGGcCGUCGUGUa -3'
miRNA:   3'- -CGCaaCGGGGGa-------------UCGUC-GCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 127675 0.67 0.76756
Target:  5'- gGCGgcgGCCaCCUccacggcGGCGGCGUCGuCGUc -3'
miRNA:   3'- -CGCaa-CGGgGGA-------UCGUCGCAGC-GCAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.