miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 5' -58.6 NC_004812.1 + 29585 0.71 0.51293
Target:  5'- gGCGgcaUGCCCUCgcGCGGCGgCGCGg- -3'
miRNA:   3'- -CGCa--ACGGGGGauCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 30317 0.68 0.720956
Target:  5'- cGCGggcaccaggaacgGCCCCgCgagcucgaacgccAGCGGCGUCGCGUc -3'
miRNA:   3'- -CGCaa-----------CGGGG-Ga------------UCGUCGCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 31810 0.66 0.829889
Target:  5'- ----cGCCCCUUGGUGGCGUaguggugcCGCGg- -3'
miRNA:   3'- cgcaaCGGGGGAUCGUCGCA--------GCGCac -5'
21389 5' -58.6 NC_004812.1 + 32129 0.67 0.768486
Target:  5'- cGCGgggGCuccuCCCCgcccgGGCGGCGcCGCGg- -3'
miRNA:   3'- -CGCaa-CG----GGGGa----UCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 32485 0.68 0.691487
Target:  5'- gGCGcgGCCCgUcGGCGGCGUacCGCGUu -3'
miRNA:   3'- -CGCaaCGGGgGaUCGUCGCA--GCGCAc -5'
21389 5' -58.6 NC_004812.1 + 32567 0.67 0.762915
Target:  5'- cGCG--GCCCCCcagcacacgcgcagGGCGGcCGUCGUGUa -3'
miRNA:   3'- -CGCaaCGGGGGa-------------UCGUC-GCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 34677 0.68 0.671589
Target:  5'- cGCGU--CCCCC-AGCuGCGagGCGUGc -3'
miRNA:   3'- -CGCAacGGGGGaUCGuCGCagCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 35278 0.69 0.651567
Target:  5'- gGCGc-GCgCCCUGGCcgaGGCGUCGCccggGUGg -3'
miRNA:   3'- -CGCaaCGgGGGAUCG---UCGCAGCG----CAC- -5'
21389 5' -58.6 NC_004812.1 + 36414 0.68 0.701369
Target:  5'- -gGUUGCCCgCgacGaCGGCGUUGCGUa -3'
miRNA:   3'- cgCAACGGGgGau-C-GUCGCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 36581 0.67 0.740249
Target:  5'- aCGUUGCCgCggGGCuGCGUgaGCGUGa -3'
miRNA:   3'- cGCAACGGgGgaUCGuCGCAg-CGCAC- -5'
21389 5' -58.6 NC_004812.1 + 38771 0.7 0.581413
Target:  5'- aGCGgcGCCCCgCgcGUcGCGUCGCGa- -3'
miRNA:   3'- -CGCaaCGGGG-GauCGuCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 43520 0.71 0.51293
Target:  5'- gGCGUggGUCCgCCgcGGCGGUGUCGCGg- -3'
miRNA:   3'- -CGCAa-CGGG-GGa-UCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 44338 0.67 0.740249
Target:  5'- gGCGcgGCCCag-AGCGGCG-CGCGg- -3'
miRNA:   3'- -CGCaaCGGGggaUCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 47017 0.66 0.829889
Target:  5'- gGCGccaugGCCaCCCgauagacgGGCAGCGggguUUGCGUGc -3'
miRNA:   3'- -CGCaa---CGG-GGGa-------UCGUCGC----AGCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 47092 0.66 0.79567
Target:  5'- gGCGccucgGCCCCC-GGCucCGUCGCGg- -3'
miRNA:   3'- -CGCaa---CGGGGGaUCGucGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 54500 0.72 0.456995
Target:  5'- -gGUU-CUCCC--GCAGCGUCGCGUGg -3'
miRNA:   3'- cgCAAcGGGGGauCGUCGCAGCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 54591 0.69 0.661589
Target:  5'- gGCGgacgaGCCaCCCUcgcGGCGGCGcCGCGa- -3'
miRNA:   3'- -CGCaa---CGG-GGGA---UCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 55394 0.68 0.701369
Target:  5'- cGCGgcGCCCCugCUGGCGGC--CGCGg- -3'
miRNA:   3'- -CGCaaCGGGG--GAUCGUCGcaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 55770 0.69 0.651567
Target:  5'- cGCGcccUGCCCCUgGGCAGCccCGCGg- -3'
miRNA:   3'- -CGCa--ACGGGGGaUCGUCGcaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 56240 0.66 0.821575
Target:  5'- ----cGCCCCCcGGCGGCGggCGCc-- -3'
miRNA:   3'- cgcaaCGGGGGaUCGUCGCa-GCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.