miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 5' -58.6 NC_004812.1 + 109946 0.7 0.581413
Target:  5'- gGCGcgGCgCCCUGGCGGcCGUgGCGcUGc -3'
miRNA:   3'- -CGCaaCGgGGGAUCGUC-GCAgCGC-AC- -5'
21389 5' -58.6 NC_004812.1 + 7870 0.7 0.581413
Target:  5'- aGCGgcGCCCCgCgcGUcGCGUCGCGa- -3'
miRNA:   3'- -CGCaaCGGGG-GauCGuCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 38771 0.7 0.581413
Target:  5'- aGCGgcGCCCCgCgcGUcGCGUCGCGa- -3'
miRNA:   3'- -CGCaaCGGGG-GauCGuCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 15965 0.69 0.611404
Target:  5'- cGCGUggcGCCgCCgcGCGGCGgCGCGUc -3'
miRNA:   3'- -CGCAa--CGGgGGauCGUCGCaGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 12895 0.69 0.62144
Target:  5'- aGCGgcgcucggUGCCCCCggGGCGGCG-CgGCGa- -3'
miRNA:   3'- -CGCa-------ACGGGGGa-UCGUCGCaG-CGCac -5'
21389 5' -58.6 NC_004812.1 + 127866 0.69 0.631484
Target:  5'- gGCGUcggGCCCggcgCgcGCGGCGUCGCGg- -3'
miRNA:   3'- -CGCAa--CGGGg---GauCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 2358 0.69 0.631484
Target:  5'- gGCGUcggGCCCggcgCgcGCGGCGUCGCGg- -3'
miRNA:   3'- -CGCAa--CGGGg---GauCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 18215 0.69 0.631484
Target:  5'- cGCGguaguagGCCaCCCgGGCGGCGUaCGCGc- -3'
miRNA:   3'- -CGCaa-----CGG-GGGaUCGUCGCA-GCGCac -5'
21389 5' -58.6 NC_004812.1 + 127393 0.69 0.641529
Target:  5'- gGCGUgGUCCCCgAGCAGCacCGCGg- -3'
miRNA:   3'- -CGCAaCGGGGGaUCGUCGcaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 55770 0.69 0.651567
Target:  5'- cGCGcccUGCCCCUgGGCAGCccCGCGg- -3'
miRNA:   3'- -CGCa--ACGGGGGaUCGUCGcaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 141852 0.69 0.651567
Target:  5'- aGCGUgucgucGCCCCCggAGCAGC--CGCGg- -3'
miRNA:   3'- -CGCAa-----CGGGGGa-UCGUCGcaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 4377 0.69 0.651567
Target:  5'- gGCGc-GCgCCCUGGCcgaGGCGUCGCccggGUGg -3'
miRNA:   3'- -CGCaaCGgGGGAUCG---UCGCAGCG----CAC- -5'
21389 5' -58.6 NC_004812.1 + 35278 0.69 0.651567
Target:  5'- gGCGc-GCgCCCUGGCcgaGGCGUCGCccggGUGg -3'
miRNA:   3'- -CGCaaCGgGGGAUCG---UCGCAGCG----CAC- -5'
21389 5' -58.6 NC_004812.1 + 81276 0.69 0.651567
Target:  5'- aCGUUGCCgUCUGGCGagaccuGCGUCGCc-- -3'
miRNA:   3'- cGCAACGGgGGAUCGU------CGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 19169 0.69 0.660588
Target:  5'- gGCGgcGCCCCC-AGaaaccuuCAGCGUCGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGaUC-------GUCGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 54591 0.69 0.661589
Target:  5'- gGCGgacgaGCCaCCCUcgcGGCGGCGcCGCGa- -3'
miRNA:   3'- -CGCaa---CGG-GGGA---UCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 152660 0.69 0.665592
Target:  5'- gGCGccggGCCUCCgggaggcgggGGCAGCGagggcgcuugggcccUCGCGUGg -3'
miRNA:   3'- -CGCaa--CGGGGGa---------UCGUCGC---------------AGCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 34677 0.68 0.671589
Target:  5'- cGCGU--CCCCC-AGCuGCGagGCGUGc -3'
miRNA:   3'- -CGCAacGGGGGaUCGuCGCagCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 78774 0.68 0.690496
Target:  5'- cGCGgcGCCcuggacgCCCUGGC-GCGggGCGUGg -3'
miRNA:   3'- -CGCaaCGG-------GGGAUCGuCGCagCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 32485 0.68 0.691487
Target:  5'- gGCGcgGCCCgUcGGCGGCGUacCGCGUu -3'
miRNA:   3'- -CGCaaCGGGgGaUCGUCGCA--GCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.