Results 1 - 20 of 98 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 30317 | 0.68 | 0.720956 |
Target: 5'- cGCGggcaccaggaacgGCCCCgCgagcucgaacgccAGCGGCGUCGCGUc -3' miRNA: 3'- -CGCaa-----------CGGGG-Ga------------UCGUCGCAGCGCAc -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 4377 | 0.69 | 0.651567 |
Target: 5'- gGCGc-GCgCCCUGGCcgaGGCGUCGCccggGUGg -3' miRNA: 3'- -CGCaaCGgGGGAUCG---UCGCAGCG----CAC- -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 81276 | 0.69 | 0.651567 |
Target: 5'- aCGUUGCCgUCUGGCGagaccuGCGUCGCc-- -3' miRNA: 3'- cGCAACGGgGGAUCGU------CGCAGCGcac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 19169 | 0.69 | 0.660588 |
Target: 5'- gGCGgcGCCCCC-AGaaaccuuCAGCGUCGCc-- -3' miRNA: 3'- -CGCaaCGGGGGaUC-------GUCGCAGCGcac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 34677 | 0.68 | 0.671589 |
Target: 5'- cGCGU--CCCCC-AGCuGCGagGCGUGc -3' miRNA: 3'- -CGCAacGGGGGaUCGuCGCagCGCAC- -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 32485 | 0.68 | 0.691487 |
Target: 5'- gGCGcgGCCCgUcGGCGGCGUacCGCGUu -3' miRNA: 3'- -CGCaaCGGGgGaUCGUCGCA--GCGCAc -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 36414 | 0.68 | 0.701369 |
Target: 5'- -gGUUGCCCgCgacGaCGGCGUUGCGUa -3' miRNA: 3'- cgCAACGGGgGau-C-GUCGCAGCGCAc -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 129763 | 0.68 | 0.701369 |
Target: 5'- gGCGgcGCCCgCCgcGGCGGCGuucUCGCGc- -3' miRNA: 3'- -CGCaaCGGG-GGa-UCGUCGC---AGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 25896 | 0.68 | 0.720956 |
Target: 5'- cGCGgcGCCCgcgcccagcgCCgcgGGCGcGCGUCGCGa- -3' miRNA: 3'- -CGCaaCGGG----------GGa--UCGU-CGCAGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 127866 | 0.69 | 0.631484 |
Target: 5'- gGCGUcggGCCCggcgCgcGCGGCGUCGCGg- -3' miRNA: 3'- -CGCAa--CGGGg---GauCGUCGCAGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 76291 | 0.7 | 0.581413 |
Target: 5'- cGCGgccGCCUCC-AGCAGCGcggCGCGg- -3' miRNA: 3'- -CGCaa-CGGGGGaUCGUCGCa--GCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 7870 | 0.7 | 0.581413 |
Target: 5'- aGCGgcGCCCCgCgcGUcGCGUCGCGa- -3' miRNA: 3'- -CGCaaCGGGG-GauCGuCGCAGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 83987 | 0.73 | 0.430279 |
Target: 5'- cGCGgcccgGCCCuCCUugGGgGGCGUCGCGg- -3' miRNA: 3'- -CGCaa---CGGG-GGA--UCgUCGCAGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 54500 | 0.72 | 0.456995 |
Target: 5'- -gGUU-CUCCC--GCAGCGUCGCGUGg -3' miRNA: 3'- cgCAAcGGGGGauCGUCGCAGCGCAC- -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 79358 | 0.72 | 0.484577 |
Target: 5'- aGCGgcGCCCCCgcgagGGCAGCGccccacaccccCGCGUc -3' miRNA: 3'- -CGCaaCGGGGGa----UCGUCGCa----------GCGCAc -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 122465 | 0.72 | 0.493947 |
Target: 5'- gGCGcggGCgCCCCUGGCgGGCGcCGgGUGg -3' miRNA: 3'- -CGCaa-CG-GGGGAUCG-UCGCaGCgCAC- -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 155093 | 0.71 | 0.51293 |
Target: 5'- gGCGgcaUGCCCUCgcGCGGCGgCGCGg- -3' miRNA: 3'- -CGCa--ACGGGGGauCGUCGCaGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 15128 | 0.71 | 0.522533 |
Target: 5'- gGCGgcGCCCCCgacGGCGaCGUCGCa-- -3' miRNA: 3'- -CGCaaCGGGGGa--UCGUcGCAGCGcac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 110031 | 0.71 | 0.541941 |
Target: 5'- cGCGUguaGUCCCCgGGCGGUG-CGCGg- -3' miRNA: 3'- -CGCAa--CGGGGGaUCGUCGCaGCGCac -5' |
|||||||
21389 | 5' | -58.6 | NC_004812.1 | + | 109946 | 0.7 | 0.581413 |
Target: 5'- gGCGcgGCgCCCUGGCGGcCGUgGCGcUGc -3' miRNA: 3'- -CGCaaCGgGGGAUCGUC-GCAgCGC-AC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home