miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 5' -58.6 NC_004812.1 + 133518 1.1 0.001383
Target:  5'- gGCGUUGCCCCCUAGCAGCGUCGCGUGg -3'
miRNA:   3'- -CGCAACGGGGGAUCGUCGCAGCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 35278 0.69 0.651567
Target:  5'- gGCGc-GCgCCCUGGCcgaGGCGUCGCccggGUGg -3'
miRNA:   3'- -CGCaaCGgGGGAUCG---UCGCAGCG----CAC- -5'
21389 5' -58.6 NC_004812.1 + 55770 0.69 0.651567
Target:  5'- cGCGcccUGCCCCUgGGCAGCccCGCGg- -3'
miRNA:   3'- -CGCa--ACGGGGGaUCGUCGcaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 109286 0.66 0.829889
Target:  5'- cCGUUGCUCgcgcuugCUGGCGGUGUCGCc-- -3'
miRNA:   3'- cGCAACGGGg------GAUCGUCGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 153366 0.72 0.493947
Target:  5'- gGCGcggGCgCCCCUGGCgGGCGcCGgGUGg -3'
miRNA:   3'- -CGCaa-CG-GGGGAUCG-UCGCaGCgCAC- -5'
21389 5' -58.6 NC_004812.1 + 84642 0.71 0.5034
Target:  5'- cGCGUgaGCCUCCcgcGGCGcGCGUCGCGg- -3'
miRNA:   3'- -CGCAa-CGGGGGa--UCGU-CGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 29585 0.71 0.51293
Target:  5'- gGCGgcaUGCCCUCgcGCGGCGgCGCGg- -3'
miRNA:   3'- -CGCa--ACGGGGGauCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 80142 0.71 0.522533
Target:  5'- gGCG-UGCCCCCUGGCcuuccuCGUCGCc-- -3'
miRNA:   3'- -CGCaACGGGGGAUCGuc----GCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 38771 0.7 0.581413
Target:  5'- aGCGgcGCCCCgCgcGUcGCGUCGCGa- -3'
miRNA:   3'- -CGCaaCGGGG-GauCGuCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 127393 0.69 0.641529
Target:  5'- gGCGUgGUCCCCgAGCAGCacCGCGg- -3'
miRNA:   3'- -CGCAaCGGGGGaUCGUCGcaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 12895 0.69 0.62144
Target:  5'- aGCGgcgcucggUGCCCCCggGGCGGCG-CgGCGa- -3'
miRNA:   3'- -CGCa-------ACGGGGGa-UCGUCGCaG-CGCac -5'
21389 5' -58.6 NC_004812.1 + 16130 0.7 0.580417
Target:  5'- gGCGgggGCCCCCguggugggGGCGGCcgugccggcuacgGUCGCGg- -3'
miRNA:   3'- -CGCaa-CGGGGGa-------UCGUCG-------------CAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 25170 0.77 0.247434
Target:  5'- -gGUcGCCCCCgcgcuccggGGCGGCGUCGCGg- -3'
miRNA:   3'- cgCAaCGGGGGa--------UCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 2358 0.69 0.631484
Target:  5'- gGCGUcggGCCCggcgCgcGCGGCGUCGCGg- -3'
miRNA:   3'- -CGCAa--CGGGg---GauCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 61535 0.73 0.404501
Target:  5'- ----aGCCCCCggacGGCGGCGgUCGCGUa -3'
miRNA:   3'- cgcaaCGGGGGa---UCGUCGC-AGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 71966 0.7 0.571477
Target:  5'- aGCGUggugGCCgUCUGGCgcGGCGUCGCc-- -3'
miRNA:   3'- -CGCAa---CGGgGGAUCG--UCGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 18215 0.69 0.631484
Target:  5'- cGCGguaguagGCCaCCCgGGCGGCGUaCGCGc- -3'
miRNA:   3'- -CGCaa-----CGG-GGGaUCGUCGCA-GCGCac -5'
21389 5' -58.6 NC_004812.1 + 141852 0.69 0.651567
Target:  5'- aGCGUgucgucGCCCCCggAGCAGC--CGCGg- -3'
miRNA:   3'- -CGCAa-----CGGGGGa-UCGUCGcaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 77111 0.73 0.404501
Target:  5'- aCGUUGCCCCCgcgggGGCGGUggcgGUCG-GUGa -3'
miRNA:   3'- cGCAACGGGGGa----UCGUCG----CAGCgCAC- -5'
21389 5' -58.6 NC_004812.1 + 43520 0.71 0.51293
Target:  5'- gGCGUggGUCCgCCgcGGCGGUGUCGCGg- -3'
miRNA:   3'- -CGCAa-CGGG-GGa-UCGUCGCAGCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.