miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 5' -58.6 NC_004812.1 + 155093 0.71 0.51293
Target:  5'- gGCGgcaUGCCCUCgcGCGGCGgCGCGg- -3'
miRNA:   3'- -CGCa--ACGGGGGauCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 153366 0.72 0.493947
Target:  5'- gGCGcggGCgCCCCUGGCgGGCGcCGgGUGg -3'
miRNA:   3'- -CGCaa-CG-GGGGAUCG-UCGCaGCgCAC- -5'
21389 5' -58.6 NC_004812.1 + 152660 0.69 0.665592
Target:  5'- gGCGccggGCCUCCgggaggcgggGGCAGCGagggcgcuugggcccUCGCGUGg -3'
miRNA:   3'- -CGCaa--CGGGGGa---------UCGUCGC---------------AGCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 150679 0.78 0.224969
Target:  5'- -gGUcGCCCCCgcgcuccgGGCGGCGUCGCGg- -3'
miRNA:   3'- cgCAaCGGGGGa-------UCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 148014 0.67 0.740249
Target:  5'- gGCGcgGCCUCCgGGCGGCG-CGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGaUCGUCGCaGCGcac -5'
21389 5' -58.6 NC_004812.1 + 147758 0.67 0.777675
Target:  5'- cGCGggGCUCCCgcgggacGCGGgGUCGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGau-----CGUCgCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 141852 0.69 0.651567
Target:  5'- aGCGUgucgucGCCCCCggAGCAGC--CGCGg- -3'
miRNA:   3'- -CGCAa-----CGGGGGa-UCGUCGcaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 138443 0.67 0.768486
Target:  5'- cGCGgggacccGCUCCCgacGGCGGCGuuUCGCGg- -3'
miRNA:   3'- -CGCaa-----CGGGGGa--UCGUCGC--AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 138279 0.66 0.78674
Target:  5'- cGCGccGCgCCCUgcgGGCGGUGgUCGCGg- -3'
miRNA:   3'- -CGCaaCGgGGGA---UCGUCGC-AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 137961 0.67 0.749764
Target:  5'- cGCGgcgGCCCCUcgucggGGCGGgGUCGgGg- -3'
miRNA:   3'- -CGCaa-CGGGGGa-----UCGUCgCAGCgCac -5'
21389 5' -58.6 NC_004812.1 + 137818 0.67 0.758242
Target:  5'- cGCGgagcagGCCCCCUGGCcccgggagguccuGGCGcUgGCGa- -3'
miRNA:   3'- -CGCaa----CGGGGGAUCG-------------UCGC-AgCGCac -5'
21389 5' -58.6 NC_004812.1 + 137012 0.67 0.730644
Target:  5'- gGCGUggGCCCgCCUGGCGGCGaUC-Ca-- -3'
miRNA:   3'- -CGCAa-CGGG-GGAUCGUCGC-AGcGcac -5'
21389 5' -58.6 NC_004812.1 + 133518 1.1 0.001383
Target:  5'- gGCGUUGCCCCCUAGCAGCGUCGCGUGg -3'
miRNA:   3'- -CGCAACGGGGGAUCGUCGCAGCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 131476 0.66 0.813096
Target:  5'- -gGUggGCUUaaaUAGCGGCGUCGCGUc -3'
miRNA:   3'- cgCAa-CGGGgg-AUCGUCGCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 129763 0.68 0.701369
Target:  5'- gGCGgcGCCCgCCgcGGCGGCGuucUCGCGc- -3'
miRNA:   3'- -CGCaaCGGG-GGa-UCGUCGC---AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 129340 0.66 0.818203
Target:  5'- cGCGgagGUCCCCgcgcaggcgcaugAGCAccagcGCGUCGCGc- -3'
miRNA:   3'- -CGCaa-CGGGGGa------------UCGU-----CGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 127926 0.66 0.813096
Target:  5'- cGCGgccaGCCCCC-AGCGcGCGcaggCGCGg- -3'
miRNA:   3'- -CGCaa--CGGGGGaUCGU-CGCa---GCGCac -5'
21389 5' -58.6 NC_004812.1 + 127866 0.69 0.631484
Target:  5'- gGCGUcggGCCCggcgCgcGCGGCGUCGCGg- -3'
miRNA:   3'- -CGCAa--CGGGg---GauCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 127675 0.67 0.76756
Target:  5'- gGCGgcgGCCaCCUccacggcGGCGGCGUCGuCGUc -3'
miRNA:   3'- -CGCaa-CGGgGGA-------UCGUCGCAGC-GCAc -5'
21389 5' -58.6 NC_004812.1 + 127393 0.69 0.641529
Target:  5'- gGCGUgGUCCCCgAGCAGCacCGCGg- -3'
miRNA:   3'- -CGCAaCGGGGGaUCGUCGcaGCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.