miRNA display CGI


Results 41 - 60 of 975 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 3' -65.8 NC_004812.1 + 129088 0.79 0.072098
Target:  5'- aGGCGGCGGcgGCGGCGGgCGGGcGCGc -3'
miRNA:   3'- aCCGCUGCCugUGCCGCCgGCCC-CGC- -5'
21390 3' -65.8 NC_004812.1 + 71239 0.79 0.072098
Target:  5'- gGcGCGGCGGGgACGGCGGCggugggccggcuCGGGGCGc -3'
miRNA:   3'- aC-CGCUGCCUgUGCCGCCG------------GCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 98382 0.79 0.072098
Target:  5'- gGGUccucgGGCGG-CGCGGCGGCCgcGGGGCGg -3'
miRNA:   3'- aCCG-----CUGCCuGUGCCGCCGG--CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 155089 0.79 0.073911
Target:  5'- cGGCGGCGGcaugcccucGCGCGGCGGCgCGGGcCGg -3'
miRNA:   3'- aCCGCUGCC---------UGUGCCGCCG-GCCCcGC- -5'
21390 3' -65.8 NC_004812.1 + 29581 0.79 0.073911
Target:  5'- cGGCGGCGGcaugcccucGCGCGGCGGCgCGGGcCGg -3'
miRNA:   3'- aCCGCUGCC---------UGUGCCGCCG-GCCCcGC- -5'
21390 3' -65.8 NC_004812.1 + 2050 0.79 0.075769
Target:  5'- cGGCGGgGGGCGCGGgGGagGGGGCGc -3'
miRNA:   3'- aCCGCUgCCUGUGCCgCCggCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 2547 0.79 0.075769
Target:  5'- gGcGCGGCGGuacucGCGCGGCGGCaGGGGCa -3'
miRNA:   3'- aC-CGCUGCC-----UGUGCCGCCGgCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 152855 0.79 0.075769
Target:  5'- gGGCGGCGGGCugGGCcugagcggcgGGCCuGGGCu -3'
miRNA:   3'- aCCGCUGCCUGugCCG----------CCGGcCCCGc -5'
21390 3' -65.8 NC_004812.1 + 121954 0.79 0.075769
Target:  5'- gGGCGGCGGGCugGGCcugagcggcgGGCCuGGGCu -3'
miRNA:   3'- aCCGCUGCCUGugCCG----------CCGGcCCCGc -5'
21390 3' -65.8 NC_004812.1 + 128055 0.79 0.075769
Target:  5'- gGcGCGGCGGuacucGCGCGGCGGCaGGGGCa -3'
miRNA:   3'- aC-CGCUGCC-----UGUGCCGCCGgCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 130992 0.79 0.075769
Target:  5'- cUGGCGcGgGGACACGGCGGC-GGcGGCGg -3'
miRNA:   3'- -ACCGC-UgCCUGUGCCGCCGgCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 5484 0.79 0.075769
Target:  5'- cUGGCGcGgGGACACGGCGGC-GGcGGCGg -3'
miRNA:   3'- -ACCGC-UgCCUGUGCCGCCGgCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 67777 0.79 0.075769
Target:  5'- cGGCGGCccgGGGCGCgGGCGGCUucggggGGGGCGg -3'
miRNA:   3'- aCCGCUG---CCUGUG-CCGCCGG------CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 117278 0.79 0.075769
Target:  5'- cGGCgGGCGGGgGCGGCggccuccgguacGGCCGGGGCc -3'
miRNA:   3'- aCCG-CUGCCUgUGCCG------------CCGGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 148179 0.79 0.075769
Target:  5'- cGGCgGGCGGGgGCGGCggccuccgguacGGCCGGGGCc -3'
miRNA:   3'- aCCG-CUGCCUgUGCCG------------CCGGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 127559 0.79 0.075769
Target:  5'- cGGCGGgGGGCGCGGgGGagGGGGCGc -3'
miRNA:   3'- aCCGCUgCCUGUGCCgCCggCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 155790 0.79 0.077671
Target:  5'- gGGCGuCGGACAccgcuuccCGGcCGGCCGuGGGCGg -3'
miRNA:   3'- aCCGCuGCCUGU--------GCC-GCCGGC-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 30282 0.79 0.077671
Target:  5'- gGGCGuCGGACAccgcuuccCGGcCGGCCGuGGGCGg -3'
miRNA:   3'- aCCGCuGCCUGU--------GCC-GCCGGC-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 104840 0.79 0.07903
Target:  5'- cGGCGGCGGucuggcucuuggccGCGcCGGCGGCCGcGGCGg -3'
miRNA:   3'- aCCGCUGCC--------------UGU-GCCGCCGGCcCCGC- -5'
21390 3' -65.8 NC_004812.1 + 102901 0.79 0.079619
Target:  5'- gGGCGGCGGAC-CGGC-GCCucgggGGGGCGg -3'
miRNA:   3'- aCCGCUGCCUGuGCCGcCGG-----CCCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.