miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 30535 0.7 0.831039
Target:  5'- cGCGCCGcgggacgggcGGGCGUCGCGcggcgCGUCGc -3'
miRNA:   3'- cCGCGGCuu--------CUCGUAGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 136476 0.7 0.831039
Target:  5'- gGGCGCCau-GGGCGaCGCGggccUCGUCu -3'
miRNA:   3'- -CCGCGGcuuCUCGUaGCGCa---AGCAGu -5'
21390 5' -54.5 NC_004812.1 + 129138 0.69 0.839314
Target:  5'- cGCGCCGgcGGGCG-CGCGgcgccgcccgCGUCu -3'
miRNA:   3'- cCGCGGCuuCUCGUaGCGCaa--------GCAGu -5'
21390 5' -54.5 NC_004812.1 + 143985 0.69 0.839314
Target:  5'- aGGCGCCGAcc-GC-UCGCGgcggCGUCu -3'
miRNA:   3'- -CCGCGGCUucuCGuAGCGCaa--GCAGu -5'
21390 5' -54.5 NC_004812.1 + 3630 0.69 0.839315
Target:  5'- cGCGCCGgcGGGCG-CGCGgcgccgcccgCGUCu -3'
miRNA:   3'- cCGCGGCuuCUCGUaGCGCaa--------GCAGu -5'
21390 5' -54.5 NC_004812.1 + 75374 0.69 0.839315
Target:  5'- -cCG-CGAGGuGCA-CGCGUUCGUCAc -3'
miRNA:   3'- ccGCgGCUUCuCGUaGCGCAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 141431 0.69 0.839315
Target:  5'- aGGC-CCGGAGGGCggCGCGccacgUGUCGu -3'
miRNA:   3'- -CCGcGGCUUCUCGuaGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 127819 0.69 0.846601
Target:  5'- aGGCGCCGcgccacggccgaaAAGAGCGggGCGUgcUCG-CAg -3'
miRNA:   3'- -CCGCGGC-------------UUCUCGUagCGCA--AGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 106096 0.69 0.847401
Target:  5'- cGGCGgUGGAGAGCAgcgCGCGggUGa-- -3'
miRNA:   3'- -CCGCgGCUUCUCGUa--GCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 41464 0.69 0.847401
Target:  5'- cGGUGCCGcAGGGC--CGCccUCGUCAg -3'
miRNA:   3'- -CCGCGGCuUCUCGuaGCGcaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 81112 0.69 0.850581
Target:  5'- gGGCGCUGggGGGCGUgccgcuggaccuggcCGCGgccgCGgagCAg -3'
miRNA:   3'- -CCGCGGCuuCUCGUA---------------GCGCaa--GCa--GU- -5'
21390 5' -54.5 NC_004812.1 + 107179 0.69 0.855291
Target:  5'- uGCGCCGGgcgagcGGAGCGUgGCGgUCGggCGg -3'
miRNA:   3'- cCGCGGCU------UCUCGUAgCGCaAGCa-GU- -5'
21390 5' -54.5 NC_004812.1 + 99830 0.69 0.855291
Target:  5'- cGGCGCCGguGAGgAagGCGggcugcagcUCGUCGg -3'
miRNA:   3'- -CCGCGGCuuCUCgUagCGCa--------AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 104046 0.69 0.855291
Target:  5'- cGGCGUCGggGAGC-UCgGCGgugccgGUCGg -3'
miRNA:   3'- -CCGCGGCuuCUCGuAG-CGCaag---CAGU- -5'
21390 5' -54.5 NC_004812.1 + 142896 0.69 0.855292
Target:  5'- cGCuGaCCGAGGAGCAcaUGCaGUUCGUCGa -3'
miRNA:   3'- cCG-C-GGCUUCUCGUa-GCG-CAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 9773 0.69 0.86298
Target:  5'- cGCGCCGgcG-GCcgCGCGggUGUCc -3'
miRNA:   3'- cCGCGGCuuCuCGuaGCGCaaGCAGu -5'
21390 5' -54.5 NC_004812.1 + 96722 0.69 0.86298
Target:  5'- cGGCGgCGAuAGGGC-UCGCcGUgggCGUCGg -3'
miRNA:   3'- -CCGCgGCU-UCUCGuAGCG-CAa--GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 102070 0.69 0.86298
Target:  5'- cGCGCCGGGcgcgccGGGCAccaaCGCGUcCGUCGa -3'
miRNA:   3'- cCGCGGCUU------CUCGUa---GCGCAaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 85395 0.69 0.870459
Target:  5'- gGGCGCCcGGGGGC--CGCGUUCcUCu -3'
miRNA:   3'- -CCGCGGcUUCUCGuaGCGCAAGcAGu -5'
21390 5' -54.5 NC_004812.1 + 71130 0.69 0.870459
Target:  5'- gGGCGCCucGGGGguUCGggggcgcgcgaGUUCGUCGg -3'
miRNA:   3'- -CCGCGGcuUCUCguAGCg----------CAAGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.