Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21391 | 3' | -57.8 | NC_004812.1 | + | 132360 | 1.05 | 0.00331 |
Target: 5'- gAACGCGGGAUUUCUCCCCGGGGAUGUg -3' miRNA: 3'- -UUGCGCCCUAAAGAGGGGCCCCUACA- -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 50750 | 0.75 | 0.323195 |
Target: 5'- gAACGCGGGGccgaguacgugUCcgCCCCGGGGGUGc -3' miRNA: 3'- -UUGCGCCCUaa---------AGa-GGGGCCCCUACa -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 105836 | 0.74 | 0.378845 |
Target: 5'- cGGCGCGGGGUUcaUCUcggCCUCGGGGAcGUc -3' miRNA: 3'- -UUGCGCCCUAA--AGA---GGGGCCCCUaCA- -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 78963 | 0.73 | 0.429886 |
Target: 5'- cGACGCGGGAguacUUCCaCCGGGGGgcgGUu -3' miRNA: 3'- -UUGCGCCCUaaa-GAGG-GGCCCCUa--CA- -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 131347 | 0.71 | 0.523121 |
Target: 5'- cGGCGUGcGGuAUUUCgCCCCGGGGAggGUu -3' miRNA: 3'- -UUGCGC-CC-UAAAGaGGGGCCCCUa-CA- -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 98720 | 0.71 | 0.532899 |
Target: 5'- cGGCGCGGGGUcgUUCUCgCgCGGGGGc-- -3' miRNA: 3'- -UUGCGCCCUA--AAGAG-GgGCCCCUaca -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 59602 | 0.71 | 0.542742 |
Target: 5'- gGGCGCGGGcggcgCUCgcgaaCCGGGGGUGg -3' miRNA: 3'- -UUGCGCCCuaaa-GAGg----GGCCCCUACa -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 105458 | 0.71 | 0.546697 |
Target: 5'- cGACGCGGGGcggggcgcgcgcCUCCCCGGGGuaGUa -3' miRNA: 3'- -UUGCGCCCUaaa---------GAGGGGCCCCuaCA- -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 13573 | 0.71 | 0.562601 |
Target: 5'- gGGCGCcGGAgcgagUUUCCCCGGGGGg-- -3' miRNA: 3'- -UUGCGcCCUaa---AGAGGGGCCCCUaca -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 26319 | 0.7 | 0.58265 |
Target: 5'- --gGCGGGGUUcgcggccgcUCgggggUCCCGGGGGUGg -3' miRNA: 3'- uugCGCCCUAA---------AGa----GGGGCCCCUACa -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 71975 | 0.7 | 0.58265 |
Target: 5'- -cCGCGGGAggcUCacgcgCCCCGGGGcUGg -3' miRNA: 3'- uuGCGCCCUaa-AGa----GGGGCCCCuACa -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 144624 | 0.7 | 0.592731 |
Target: 5'- uGACgGCGGGAcgcgcgccaUCgcgUCCCGGGGAUGUc -3' miRNA: 3'- -UUG-CGCCCUaa-------AGa--GGGGCCCCUACA- -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 52059 | 0.7 | 0.592731 |
Target: 5'- cACGCGGGca-UCggCCaCCGGGGGUGc -3' miRNA: 3'- uUGCGCCCuaaAGa-GG-GGCCCCUACa -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 76853 | 0.69 | 0.643414 |
Target: 5'- cGGCGuCGGGcaggcacgUCcaccCCCCGGGGAUGUc -3' miRNA: 3'- -UUGC-GCCCuaa-----AGa---GGGGCCCCUACA- -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 71835 | 0.69 | 0.66368 |
Target: 5'- gGACGUGGGcgUuggcgUCUccggCCCgGGGGAUGg -3' miRNA: 3'- -UUGCGCCCuaA-----AGA----GGGgCCCCUACa -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 156373 | 0.69 | 0.67378 |
Target: 5'- cGCGCGGGAgccUUgggCCCCGcGGGAg-- -3' miRNA: 3'- uUGCGCCCUaa-AGa--GGGGC-CCCUaca -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 125472 | 0.69 | 0.67378 |
Target: 5'- cGCGCGGGAgccUUgggCCCCGcGGGAg-- -3' miRNA: 3'- uUGCGCCCUaa-AGa--GGGGC-CCCUaca -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 105258 | 0.68 | 0.713756 |
Target: 5'- gGGCGCGGGcgg-CUCCCCGGcGAc-- -3' miRNA: 3'- -UUGCGCCCuaaaGAGGGGCCcCUaca -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 110154 | 0.68 | 0.723602 |
Target: 5'- gGACGCGGaGGcccuggCCCgCGGGGGUGUc -3' miRNA: 3'- -UUGCGCC-CUaaaga-GGG-GCCCCUACA- -5' |
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21391 | 3' | -57.8 | NC_004812.1 | + | 132527 | 0.68 | 0.73337 |
Target: 5'- --gGCGGGucggcgcacAUUUC-CCCCGGGGAc-- -3' miRNA: 3'- uugCGCCC---------UAAAGaGGGGCCCCUaca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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