miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21391 3' -57.8 NC_004812.1 + 3504 0.66 0.811137
Target:  5'- gGGCGCGGGcccggggccggCggCCCCGGGGgcGg -3'
miRNA:   3'- -UUGCGCCCuaaa-------Ga-GGGGCCCCuaCa -5'
21391 3' -57.8 NC_004812.1 + 7018 0.68 0.73337
Target:  5'- --gGCGGGucggcgcacAUUUC-CCCCGGGGAc-- -3'
miRNA:   3'- uugCGCCC---------UAAAGaGGGGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 12849 0.67 0.798823
Target:  5'- gGGCGCGGGAggaa-CCgCGGGGAa-- -3'
miRNA:   3'- -UUGCGCCCUaaagaGGgGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 13573 0.71 0.562601
Target:  5'- gGGCGCcGGAgcgagUUUCCCCGGGGGg-- -3'
miRNA:   3'- -UUGCGcCCUaa---AGAGGGGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 24055 0.66 0.824826
Target:  5'- cGACGgGGGAcg-CcgccccucgcgUCCCCGGGGGaaaUGUg -3'
miRNA:   3'- -UUGCgCCCUaaaG-----------AGGGGCCCCU---ACA- -5'
21391 3' -57.8 NC_004812.1 + 25249 0.67 0.798823
Target:  5'- gGGC-CGGGAaccCUCCCCGGGGc--- -3'
miRNA:   3'- -UUGcGCCCUaaaGAGGGGCCCCuaca -5'
21391 3' -57.8 NC_004812.1 + 26319 0.7 0.58265
Target:  5'- --gGCGGGGUUcgcggccgcUCgggggUCCCGGGGGUGg -3'
miRNA:   3'- uugCGCCCUAA---------AGa----GGGGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 36889 0.66 0.849279
Target:  5'- uACGCGGGGUgguaggCgCCGGGGGg-- -3'
miRNA:   3'- uUGCGCCCUAaaga--GgGGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 38642 0.66 0.841312
Target:  5'- cAGCGgGGGGUUgaacagCCCCaGGGGcAUGa -3'
miRNA:   3'- -UUGCgCCCUAAaga---GGGG-CCCC-UACa -5'
21391 3' -57.8 NC_004812.1 + 40206 0.66 0.849279
Target:  5'- -cCGCGGGGgcUCUgCgCGGGGGUc- -3'
miRNA:   3'- uuGCGCCCUaaAGAgGgGCCCCUAca -5'
21391 3' -57.8 NC_004812.1 + 43426 0.66 0.841312
Target:  5'- gAGCGCGGacauuaUCUCgCCggCGGGGGUGUa -3'
miRNA:   3'- -UUGCGCCcuaa--AGAG-GG--GCCCCUACA- -5'
21391 3' -57.8 NC_004812.1 + 49663 0.66 0.849279
Target:  5'- cGCGCGGaGAgcgCcgUCUCCGGGGAcGUu -3'
miRNA:   3'- uUGCGCC-CUaaaG--AGGGGCCCCUaCA- -5'
21391 3' -57.8 NC_004812.1 + 50750 0.75 0.323195
Target:  5'- gAACGCGGGGccgaguacgugUCcgCCCCGGGGGUGc -3'
miRNA:   3'- -UUGCGCCCUaa---------AGa-GGGGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 52059 0.7 0.592731
Target:  5'- cACGCGGGca-UCggCCaCCGGGGGUGc -3'
miRNA:   3'- uUGCGCCCuaaAGa-GG-GGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 59602 0.71 0.542742
Target:  5'- gGGCGCGGGcggcgCUCgcgaaCCGGGGGUGg -3'
miRNA:   3'- -UUGCGCCCuaaa-GAGg----GGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 61461 0.66 0.841312
Target:  5'- aAGCGUGGGug-UUUCCCCGcGGAa-- -3'
miRNA:   3'- -UUGCGCCCuaaAGAGGGGCcCCUaca -5'
21391 3' -57.8 NC_004812.1 + 70862 0.66 0.833159
Target:  5'- aGACGCGGGGggcguggCUgCgCGGGGggGg -3'
miRNA:   3'- -UUGCGCCCUaaa----GAgGgGCCCCuaCa -5'
21391 3' -57.8 NC_004812.1 + 71124 0.66 0.849279
Target:  5'- aGGCGCGGGcg----CCUCGGGGGUu- -3'
miRNA:   3'- -UUGCGCCCuaaagaGGGGCCCCUAca -5'
21391 3' -57.8 NC_004812.1 + 71835 0.69 0.66368
Target:  5'- gGACGUGGGcgUuggcgUCUccggCCCgGGGGAUGg -3'
miRNA:   3'- -UUGCGCCCuaA-----AGA----GGGgCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 71975 0.7 0.58265
Target:  5'- -cCGCGGGAggcUCacgcgCCCCGGGGcUGg -3'
miRNA:   3'- uuGCGCCCUaa-AGa----GGGGCCCCuACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.