miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21391 3' -57.8 NC_004812.1 + 71124 0.66 0.849279
Target:  5'- aGGCGCGGGcg----CCUCGGGGGUu- -3'
miRNA:   3'- -UUGCGCCCuaaagaGGGGCCCCUAca -5'
21391 3' -57.8 NC_004812.1 + 122345 0.66 0.80765
Target:  5'- gGGCGCGGGGU---UCCCggCGGGGGc-- -3'
miRNA:   3'- -UUGCGCCCUAaagAGGG--GCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 129012 0.66 0.811137
Target:  5'- gGGCGCGGGcccggggccggCggCCCCGGGGgcGg -3'
miRNA:   3'- -UUGCGCCCuaaa-------Ga-GGGGCCCCuaCa -5'
21391 3' -57.8 NC_004812.1 + 82126 0.66 0.824826
Target:  5'- cGACGaCGGGGUggCgggugCCaCGGGGGUGa -3'
miRNA:   3'- -UUGC-GCCCUAaaGa----GGgGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 149564 0.66 0.824826
Target:  5'- cGACGgGGGAcg-CcgccccucgcgUCCCCGGGGGaaaUGUg -3'
miRNA:   3'- -UUGCgCCCUaaaG-----------AGGGGCCCCU---ACA- -5'
21391 3' -57.8 NC_004812.1 + 75830 0.66 0.833159
Target:  5'- cAGCGCcGGGUggugCUggUCUCGGGGGUGUa -3'
miRNA:   3'- -UUGCGcCCUAaa--GA--GGGGCCCCUACA- -5'
21391 3' -57.8 NC_004812.1 + 70862 0.66 0.833159
Target:  5'- aGACGCGGGGggcguggCUgCgCGGGGggGg -3'
miRNA:   3'- -UUGCGCCCUaaa----GAgGgGCCCCuaCa -5'
21391 3' -57.8 NC_004812.1 + 38642 0.66 0.841312
Target:  5'- cAGCGgGGGGUUgaacagCCCCaGGGGcAUGa -3'
miRNA:   3'- -UUGCgCCCUAAaga---GGGG-CCCC-UACa -5'
21391 3' -57.8 NC_004812.1 + 43426 0.66 0.841312
Target:  5'- gAGCGCGGacauuaUCUCgCCggCGGGGGUGUa -3'
miRNA:   3'- -UUGCGCCcuaa--AGAG-GG--GCCCCUACA- -5'
21391 3' -57.8 NC_004812.1 + 25249 0.67 0.798823
Target:  5'- gGGC-CGGGAaccCUCCCCGGGGc--- -3'
miRNA:   3'- -UUGcGCCCUaaaGAGGGGCCCCuaca -5'
21391 3' -57.8 NC_004812.1 + 133968 0.68 0.73337
Target:  5'- cACGCGGGAg--C-CCCCGGGuGgcGg -3'
miRNA:   3'- uUGCGCCCUaaaGaGGGGCCC-CuaCa -5'
21391 3' -57.8 NC_004812.1 + 132527 0.68 0.73337
Target:  5'- --gGCGGGucggcgcacAUUUC-CCCCGGGGAc-- -3'
miRNA:   3'- uugCGCCC---------UAAAGaGGGGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 59602 0.71 0.542742
Target:  5'- gGGCGCGGGcggcgCUCgcgaaCCGGGGGUGg -3'
miRNA:   3'- -UUGCGCCCuaaa-GAGg----GGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 26319 0.7 0.58265
Target:  5'- --gGCGGGGUUcgcggccgcUCgggggUCCCGGGGGUGg -3'
miRNA:   3'- uugCGCCCUAA---------AGa----GGGGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 71975 0.7 0.58265
Target:  5'- -cCGCGGGAggcUCacgcgCCCCGGGGcUGg -3'
miRNA:   3'- uuGCGCCCUaa-AGa----GGGGCCCCuACa -5'
21391 3' -57.8 NC_004812.1 + 52059 0.7 0.592731
Target:  5'- cACGCGGGca-UCggCCaCCGGGGGUGc -3'
miRNA:   3'- uUGCGCCCuaaAGa-GG-GGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 76853 0.69 0.643414
Target:  5'- cGGCGuCGGGcaggcacgUCcaccCCCCGGGGAUGUc -3'
miRNA:   3'- -UUGC-GCCCuaa-----AGa---GGGGCCCCUACA- -5'
21391 3' -57.8 NC_004812.1 + 71835 0.69 0.66368
Target:  5'- gGACGUGGGcgUuggcgUCUccggCCCgGGGGAUGg -3'
miRNA:   3'- -UUGCGCCCuaA-----AGA----GGGgCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 125472 0.69 0.67378
Target:  5'- cGCGCGGGAgccUUgggCCCCGcGGGAg-- -3'
miRNA:   3'- uUGCGCCCUaa-AGa--GGGGC-CCCUaca -5'
21391 3' -57.8 NC_004812.1 + 110154 0.68 0.723602
Target:  5'- gGACGCGGaGGcccuggCCCgCGGGGGUGUc -3'
miRNA:   3'- -UUGCGCC-CUaaaga-GGG-GCCCCUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.