miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 29949 0.71 0.416135
Target:  5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3'
miRNA:   3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 30522 0.71 0.416135
Target:  5'- cGGGGccggGGGCC-GCGCCgCG-GGACGg -3'
miRNA:   3'- cCCCCa---CUCGGaCGCGGaGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 5978 0.7 0.422839
Target:  5'- gGGGGGcGAGUCgcggggugguagGCGCCg-GGGGGCGa -3'
miRNA:   3'- -CCCCCaCUCGGa-----------CGCGGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 122196 0.7 0.424525
Target:  5'- uGGuGGGcGGGCUgucuggGCGCCgcccCGGGGGCGg -3'
miRNA:   3'- -CC-CCCaCUCGGa-----CGCGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 78952 0.7 0.424525
Target:  5'- cGGGGGUGcGCCgggggucgggggUGCGCCgggggUCGGGGguGCGc -3'
miRNA:   3'- -CCCCCACuCGG------------ACGCGG-----AGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 117676 0.7 0.424525
Target:  5'- gGGGGGUGccggcggaggccGGCCcGCGCCcccCGGGGucGCGg -3'
miRNA:   3'- -CCCCCAC------------UCGGaCGCGGa--GCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 153097 0.7 0.424526
Target:  5'- uGGuGGGcGGGCUgucuggGCGCCgcccCGGGGGCGg -3'
miRNA:   3'- -CC-CCCaCUCGGa-----CGCGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 148577 0.7 0.424526
Target:  5'- gGGGGGUGccggcggaggccGGCCcGCGCCcccCGGGGucGCGg -3'
miRNA:   3'- -CCCCCAC------------UCGGaCGCGGa--GCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 77944 0.7 0.433017
Target:  5'- cGGGGUGGGUCgGgGUggCGGGGGCGa -3'
miRNA:   3'- cCCCCACUCGGaCgCGgaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 68228 0.7 0.433017
Target:  5'- cGGGGGUGcgcgggGGCCgGgGCCUCGGccucGACGu -3'
miRNA:   3'- -CCCCCAC------UCGGaCgCGGAGCUc---CUGC- -5'
21392 5' -61.7 NC_004812.1 + 103504 0.7 0.433018
Target:  5'- -cGGGUGAGC--GCGCggaugCUCGGGGACGu -3'
miRNA:   3'- ccCCCACUCGgaCGCG-----GAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 17157 0.7 0.433018
Target:  5'- cGGGGG-GAGUCgugGCGUCcgaGGGGACa -3'
miRNA:   3'- -CCCCCaCUCGGa--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 83375 0.7 0.436442
Target:  5'- uGGGGGcGGGCCgcccGCccgacccgcagggcgGCCgCGAGGACGu -3'
miRNA:   3'- -CCCCCaCUCGGa---CG---------------CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 40148 0.7 0.441607
Target:  5'- cGGGGUG-GCCgGCGCCccccUCcgGGGGACa -3'
miRNA:   3'- cCCCCACuCGGaCGCGG----AG--CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 13366 0.7 0.441607
Target:  5'- cGGGGGUGcggcGGUCccuuccGCGCCgggggUCGGGGGCGc -3'
miRNA:   3'- -CCCCCAC----UCGGa-----CGCGG-----AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 102899 0.7 0.450292
Target:  5'- cGGGGcGgcgGA-CCgGCGCCUCGggGGGGCGg -3'
miRNA:   3'- -CCCC-Ca--CUcGGaCGCGGAGC--UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 101885 0.7 0.467939
Target:  5'- cGGGGGcGcGCCgggcuaggGCGCCcCGAGGcGCGg -3'
miRNA:   3'- -CCCCCaCuCGGa-------CGCGGaGCUCC-UGC- -5'
21392 5' -61.7 NC_004812.1 + 76837 0.7 0.476895
Target:  5'- cGGGGGcGcGCCUGCGCggCGucGGGCa -3'
miRNA:   3'- -CCCCCaCuCGGACGCGgaGCu-CCUGc -5'
21392 5' -61.7 NC_004812.1 + 100828 0.7 0.476895
Target:  5'- cGGGGGcgGGcGCCgcgaCGCCggggagggCGAGGACGg -3'
miRNA:   3'- -CCCCCa-CU-CGGac--GCGGa-------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 155312 0.69 0.485935
Target:  5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3'
miRNA:   3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.