miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21393 3' -58.8 NC_004812.1 + 131528 1.06 0.002565
Target:  5'- gAUCUGGAGCGACGCACCAUCUCCCCGc -3'
miRNA:   3'- -UAGACCUCGCUGCGUGGUAGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 12153 0.88 0.04696
Target:  5'- -gCUGGGGCGGCGCGCCGUCggggCCCCa -3'
miRNA:   3'- uaGACCUCGCUGCGUGGUAGa---GGGGc -5'
21393 3' -58.8 NC_004812.1 + 11653 0.77 0.231026
Target:  5'- gGUCggGGAGCGGCGCcucgGCC-UCUCCCCc -3'
miRNA:   3'- -UAGa-CCUCGCUGCG----UGGuAGAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 128686 0.75 0.298852
Target:  5'- gGUCUuccgGGAgGCGGgGCGCCcgGUCUCCCCGa -3'
miRNA:   3'- -UAGA----CCU-CGCUgCGUGG--UAGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 115441 0.74 0.357244
Target:  5'- -gUUGGGGCGGCGCGCCGgggCUcgaaauaaagccCCCCGc -3'
miRNA:   3'- uaGACCUCGCUGCGUGGUa--GA------------GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 58505 0.74 0.357244
Target:  5'- --aUGGGGCGACuCGCCccuguUCUCCCCGc -3'
miRNA:   3'- uagACCUCGCUGcGUGGu----AGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 38935 0.73 0.389302
Target:  5'- -gUUGGuGCcGCugaGCACCAUCUCCCCGu -3'
miRNA:   3'- uaGACCuCGcUG---CGUGGUAGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 155825 0.73 0.406023
Target:  5'- ---gGGGGCGGCgGC-CCAUCUCCCgCGg -3'
miRNA:   3'- uagaCCUCGCUG-CGuGGUAGAGGG-GC- -5'
21393 3' -58.8 NC_004812.1 + 124924 0.73 0.406023
Target:  5'- ---gGGGGCGGCgGC-CCAUCUCCCgCGg -3'
miRNA:   3'- uagaCCUCGCUG-CGuGGUAGAGGG-GC- -5'
21393 3' -58.8 NC_004812.1 + 91231 0.73 0.414551
Target:  5'- ---cGGAGCGcgucgauccGCGcCACCGUCUCCUCGa -3'
miRNA:   3'- uagaCCUCGC---------UGC-GUGGUAGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 79667 0.73 0.414551
Target:  5'- cUCcagGGGGUGcUGCGCCcgCUCCCCGa -3'
miRNA:   3'- uAGa--CCUCGCuGCGUGGuaGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 750 0.72 0.423188
Target:  5'- ---gGGGGCGGCGCgACCcUCUuCCCCGu -3'
miRNA:   3'- uagaCCUCGCUGCG-UGGuAGA-GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 31651 0.72 0.423188
Target:  5'- ---gGGGGCGGCGCgACCcUCUuCCCCGu -3'
miRNA:   3'- uagaCCUCGCUGCG-UGGuAGA-GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 103160 0.72 0.423188
Target:  5'- cGUCUGGAGCGcggggGC-CGCCGUCagcgcggCCCCGg -3'
miRNA:   3'- -UAGACCUCGC-----UGcGUGGUAGa------GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 18730 0.72 0.466091
Target:  5'- -gCUGGGGCGccGCGCGCCAUCgaaggugagggCCCGg -3'
miRNA:   3'- uaGACCUCGC--UGCGUGGUAGag---------GGGC- -5'
21393 3' -58.8 NC_004812.1 + 105463 0.72 0.467928
Target:  5'- ---cGGGGCGGgGCGCgCGcCUCCCCGg -3'
miRNA:   3'- uagaCCUCGCUgCGUG-GUaGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 89289 0.72 0.467928
Target:  5'- uUCUGuGAGCGccCGCGCuCGcCUCCCCGa -3'
miRNA:   3'- uAGAC-CUCGCu-GCGUG-GUaGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 31925 0.72 0.467928
Target:  5'- ----cGAGCGAcCGCGCCGcucgCUCCCCGg -3'
miRNA:   3'- uagacCUCGCU-GCGUGGUa---GAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 31413 0.71 0.477167
Target:  5'- ---cGGcaGGCGcCGCGCCAcCUCCCCGa -3'
miRNA:   3'- uagaCC--UCGCuGCGUGGUaGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 105967 0.71 0.486496
Target:  5'- ---aGGAGCGucCGCgaaACCAUCUCUCCGc -3'
miRNA:   3'- uagaCCUCGCu-GCG---UGGUAGAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.