miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21393 3' -58.8 NC_004812.1 + 750 0.72 0.423188
Target:  5'- ---gGGGGCGGCGCgACCcUCUuCCCCGu -3'
miRNA:   3'- uagaCCUCGCUGCG-UGGuAGA-GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 971 0.66 0.807046
Target:  5'- ---gGGAGCccGGCGUGCCcgC-CCCCGa -3'
miRNA:   3'- uagaCCUCG--CUGCGUGGuaGaGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 1141 0.66 0.789364
Target:  5'- cAUCUccGGAGCuccuuGCGUccucGCCGUCUCCCgGa -3'
miRNA:   3'- -UAGA--CCUCGc----UGCG----UGGUAGAGGGgC- -5'
21393 3' -58.8 NC_004812.1 + 1210 0.67 0.742906
Target:  5'- cUCggccgGGGGCGGCGcCGCgGgggcucCUCCCCGc -3'
miRNA:   3'- uAGa----CCUCGCUGC-GUGgUa-----GAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 2948 0.7 0.534337
Target:  5'- cUCgGcGGGCGcaccguGCGCGCCcUCUCCCCGc -3'
miRNA:   3'- uAGaC-CUCGC------UGCGUGGuAGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 5706 0.67 0.75242
Target:  5'- gGUCUccGGCGAgCGCGCCGacCUCCCCc -3'
miRNA:   3'- -UAGAccUCGCU-GCGUGGUa-GAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 9480 0.66 0.771132
Target:  5'- -gCUGcGAGCaGcACGC-CCGUCcCCCCGg -3'
miRNA:   3'- uaGAC-CUCG-C-UGCGuGGUAGaGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 10750 0.66 0.807046
Target:  5'- ---cGGcGGCGACGCGCCugcgCgagacuccgUCCCCGg -3'
miRNA:   3'- uagaCC-UCGCUGCGUGGua--G---------AGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 11653 0.77 0.231026
Target:  5'- gGUCggGGAGCGGCGCcucgGCC-UCUCCCCc -3'
miRNA:   3'- -UAGa-CCUCGCUGCG----UGGuAGAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 11757 0.68 0.654105
Target:  5'- --gUGGGGCucCGCACgcUCUCCCCGc -3'
miRNA:   3'- uagACCUCGcuGCGUGguAGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 12153 0.88 0.04696
Target:  5'- -gCUGGGGCGGCGCGCCGUCggggCCCCa -3'
miRNA:   3'- uaGACCUCGCUGCGUGGUAGa---GGGGc -5'
21393 3' -58.8 NC_004812.1 + 14605 0.66 0.798278
Target:  5'- cUCgGGccgGGUGGCGUugGCCGUCUCCaCCa -3'
miRNA:   3'- uAGaCC---UCGCUGCG--UGGUAGAGG-GGc -5'
21393 3' -58.8 NC_004812.1 + 14762 0.67 0.75242
Target:  5'- cUCcgGGGGCGACGacaCGCUcgCgUCCCCGc -3'
miRNA:   3'- uAGa-CCUCGCUGC---GUGGuaG-AGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 18730 0.72 0.466091
Target:  5'- -gCUGGGGCGccGCGCGCCAUCgaaggugagggCCCGg -3'
miRNA:   3'- uaGACCUCGC--UGCGUGGUAGag---------GGGC- -5'
21393 3' -58.8 NC_004812.1 + 20788 0.66 0.789364
Target:  5'- -cCUGGAgcaccuGCGGCGCGCCcgCgucggCgCCCGc -3'
miRNA:   3'- uaGACCU------CGCUGCGUGGuaGa----G-GGGC- -5'
21393 3' -58.8 NC_004812.1 + 21753 0.7 0.553947
Target:  5'- cGUCUGccGcCGACGCGCCGUCggucgccaccCCCCGg -3'
miRNA:   3'- -UAGACcuC-GCUGCGUGGUAGa---------GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 23584 0.7 0.583738
Target:  5'- ---aGGGGCGGCGCGCCgcggggcggggGUUgggcgCCCCGg -3'
miRNA:   3'- uagaCCUCGCUGCGUGG-----------UAGa----GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 29030 0.67 0.713836
Target:  5'- -aCUGGuagacgcgGGgGGCGCGCCccCUCCCCc -3'
miRNA:   3'- uaGACC--------UCgCUGCGUGGuaGAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 30129 0.67 0.723605
Target:  5'- gAUCgGGGGCgGGCaCGCCGggCUCCCCu -3'
miRNA:   3'- -UAGaCCUCG-CUGcGUGGUa-GAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 31413 0.71 0.477167
Target:  5'- ---cGGcaGGCGcCGCGCCAcCUCCCCGa -3'
miRNA:   3'- uagaCC--UCGCuGCGUGGUaGAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.