miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21393 3' -58.8 NC_004812.1 + 91094 0.68 0.703999
Target:  5'- ---gGGGGCGccagggGCGCGCCGUCcCCUCGc -3'
miRNA:   3'- uagaCCUCGC------UGCGUGGUAGaGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 2948 0.7 0.534337
Target:  5'- cUCgGcGGGCGcaccguGCGCGCCcUCUCCCCGc -3'
miRNA:   3'- uAGaC-CUCGC------UGCGUGGuAGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 149092 0.7 0.583738
Target:  5'- ---aGGGGCGGCGCGCCgcggggcggggGUUgggcgCCCCGg -3'
miRNA:   3'- uagaCCUCGCUGCGUGG-----------UAGa----GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 40456 0.7 0.583738
Target:  5'- ---cGGGGCGuACGgGcggcCCGUCUCCCCGu -3'
miRNA:   3'- uagaCCUCGC-UGCgU----GGUAGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 86945 0.69 0.593743
Target:  5'- ---aGGAGCGGCGCGCCAaaccgcagaccuUCgCCgCCGa -3'
miRNA:   3'- uagaCCUCGCUGCGUGGU------------AGaGG-GGC- -5'
21393 3' -58.8 NC_004812.1 + 119354 0.69 0.593743
Target:  5'- -cCUGGcgGGCGGCGCGCCugccgCCCCc -3'
miRNA:   3'- uaGACC--UCGCUGCGUGGuaga-GGGGc -5'
21393 3' -58.8 NC_004812.1 + 144451 0.69 0.644042
Target:  5'- uUCUGGGGCcccgacGGCGCGCCg---CCCCa -3'
miRNA:   3'- uAGACCUCG------CUGCGUGGuagaGGGGc -5'
21393 3' -58.8 NC_004812.1 + 11757 0.68 0.654105
Target:  5'- --gUGGGGCucCGCACgcUCUCCCCGc -3'
miRNA:   3'- uagACCUCGcuGCGUGguAGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 93560 0.68 0.67417
Target:  5'- ---cGGAGCcaGACGCccCCGcCUCCCCGg -3'
miRNA:   3'- uagaCCUCG--CUGCGu-GGUaGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 142983 0.71 0.505405
Target:  5'- gGUCgagGGGGCGACGaaCGCCAgccugUUUCCCCu -3'
miRNA:   3'- -UAGa--CCUCGCUGC--GUGGU-----AGAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 74742 0.71 0.486496
Target:  5'- cGUCUGGAGCGcGCGCAgCugcUCgcgcgcggCCCCGa -3'
miRNA:   3'- -UAGACCUCGC-UGCGUgGu--AGa-------GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 138470 0.71 0.486496
Target:  5'- uGUC-GGGGCGGgGCGCCGccCUCUCCGa -3'
miRNA:   3'- -UAGaCCUCGCUgCGUGGUa-GAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 38935 0.73 0.389302
Target:  5'- -gUUGGuGCcGCugaGCACCAUCUCCCCGu -3'
miRNA:   3'- uaGACCuCGcUG---CGUGGUAGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 124924 0.73 0.406023
Target:  5'- ---gGGGGCGGCgGC-CCAUCUCCCgCGg -3'
miRNA:   3'- uagaCCUCGCUG-CGuGGUAGAGGG-GC- -5'
21393 3' -58.8 NC_004812.1 + 750 0.72 0.423188
Target:  5'- ---gGGGGCGGCGCgACCcUCUuCCCCGu -3'
miRNA:   3'- uagaCCUCGCUGCG-UGGuAGA-GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 103160 0.72 0.423188
Target:  5'- cGUCUGGAGCGcggggGC-CGCCGUCagcgcggCCCCGg -3'
miRNA:   3'- -UAGACCUCGC-----UGcGUGGUAGa------GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 31925 0.72 0.467928
Target:  5'- ----cGAGCGAcCGCGCCGcucgCUCCCCGg -3'
miRNA:   3'- uagacCUCGCU-GCGUGGUa---GAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 89289 0.72 0.467928
Target:  5'- uUCUGuGAGCGccCGCGCuCGcCUCCCCGa -3'
miRNA:   3'- uAGAC-CUCGCu-GCGUG-GUaGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 31413 0.71 0.477167
Target:  5'- ---cGGcaGGCGcCGCGCCAcCUCCCCGa -3'
miRNA:   3'- uagaCC--UCGCuGCGUGGUaGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 105967 0.71 0.486496
Target:  5'- ---aGGAGCGucCGCgaaACCAUCUCUCCGc -3'
miRNA:   3'- uagaCCUCGCu-GCG---UGGUAGAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.