miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 3' -53 NC_004812.1 + 154473 0.75 0.647259
Target:  5'- aGGCGgcGCGGC-CGGGCUCGAgucguCCGUCGu -3'
miRNA:   3'- -CCGU--UGCUGuGUCUGAGCU-----GGCAGCu -5'
21394 3' -53 NC_004812.1 + 123572 0.75 0.647259
Target:  5'- aGGCGgcGCGGC-CGGGCUCGAgucguCCGUCGu -3'
miRNA:   3'- -CCGU--UGCUGuGUCUGAGCU-----GGCAGCu -5'
21394 3' -53 NC_004812.1 + 116336 0.75 0.657496
Target:  5'- uGGCGGCGGCGCAGGa--GACCuUCGGu -3'
miRNA:   3'- -CCGUUGCUGUGUCUgagCUGGcAGCU- -5'
21394 3' -53 NC_004812.1 + 100558 0.74 0.698152
Target:  5'- aGCucCGGCACgAGACggcgguggCGGCCGUCGAg -3'
miRNA:   3'- cCGuuGCUGUG-UCUGa-------GCUGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 97434 0.74 0.7082
Target:  5'- cGGCGACGGCAUcaAGGCcugccugCGcCCGUCGGa -3'
miRNA:   3'- -CCGUUGCUGUG--UCUGa------GCuGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 48946 0.74 0.7082
Target:  5'- uGGCGcCGACGCGGcgagcCUCGacgggGCCGUCGAg -3'
miRNA:   3'- -CCGUuGCUGUGUCu----GAGC-----UGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 77538 0.74 0.712202
Target:  5'- gGGCAGCGACucgaggagcugcaccACGGGCaCGACCGgcgCGGa -3'
miRNA:   3'- -CCGUUGCUG---------------UGUCUGaGCUGGCa--GCU- -5'
21394 3' -53 NC_004812.1 + 80354 0.74 0.728092
Target:  5'- aGGCGGCGcGCGCGGGCcUGGCCGccugCGAg -3'
miRNA:   3'- -CCGUUGC-UGUGUCUGaGCUGGCa---GCU- -5'
21394 3' -53 NC_004812.1 + 122704 0.74 0.728092
Target:  5'- cGGCGugGAgGCGGGCggCGAUCG-CGAc -3'
miRNA:   3'- -CCGUugCUgUGUCUGa-GCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 114500 0.74 0.728092
Target:  5'- cGGCgGGCGACgGCGGACUCcggGGCgCGUCGGg -3'
miRNA:   3'- -CCG-UUGCUG-UGUCUGAG---CUG-GCAGCU- -5'
21394 3' -53 NC_004812.1 + 141470 0.74 0.728092
Target:  5'- cGGCGACGGCugcGACgUCG-CCGUCGGg -3'
miRNA:   3'- -CCGUUGCUGuguCUG-AGCuGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 26111 0.73 0.73694
Target:  5'- cGGCAGCGcguccgggaucGCGaccgccgaccaccCGGGCUCGACgGUCGAg -3'
miRNA:   3'- -CCGUUGC-----------UGU-------------GUCUGAGCUGgCAGCU- -5'
21394 3' -53 NC_004812.1 + 135827 0.73 0.737918
Target:  5'- cGCAGCGccugcGCugGGACUCGG-CGUCGGg -3'
miRNA:   3'- cCGUUGC-----UGugUCUGAGCUgGCAGCU- -5'
21394 3' -53 NC_004812.1 + 45509 0.73 0.737918
Target:  5'- gGGCAGCcacaGGCGCgaGGGCUCG-CCGUCGc -3'
miRNA:   3'- -CCGUUG----CUGUG--UCUGAGCuGGCAGCu -5'
21394 3' -53 NC_004812.1 + 3799 0.73 0.747652
Target:  5'- cGGCGGCGACgGCGGcCUCGgcGCCGcCGGc -3'
miRNA:   3'- -CCGUUGCUG-UGUCuGAGC--UGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 129307 0.73 0.747652
Target:  5'- cGGCGGCGACgGCGGcCUCGgcGCCGcCGGc -3'
miRNA:   3'- -CCGUUGCUG-UGUCuGAGC--UGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 68562 0.73 0.747652
Target:  5'- cGCGagACGACGCGGACggGACCG-CGGg -3'
miRNA:   3'- cCGU--UGCUGUGUCUGagCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 35583 0.73 0.766804
Target:  5'- cGGCGGgGGCACccGACggCGACCGcCGAg -3'
miRNA:   3'- -CCGUUgCUGUGu-CUGa-GCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 96722 0.73 0.766804
Target:  5'- cGGCGGCGAUA-GGGCUCG-CCGUgGGc -3'
miRNA:   3'- -CCGUUGCUGUgUCUGAGCuGGCAgCU- -5'
21394 3' -53 NC_004812.1 + 56364 0.73 0.766804
Target:  5'- aGGUAGCGcCGCAG-CUCGuugUCGUCGAg -3'
miRNA:   3'- -CCGUUGCuGUGUCuGAGCu--GGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.