Results 1 - 20 of 327 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21394 | 3' | -53 | NC_004812.1 | + | 130457 | 1.12 | 0.004411 |
Target: 5'- cGGCAACGACACAGACUCGACCGUCGAg -3' miRNA: 3'- -CCGUUGCUGUGUCUGAGCUGGCAGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 109143 | 0.89 | 0.130715 |
Target: 5'- cGGCGGCGGCgACGGAC-CGGCCGUCGGg -3' miRNA: 3'- -CCGUUGCUG-UGUCUGaGCUGGCAGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 76545 | 0.85 | 0.222382 |
Target: 5'- gGGCGugGACGCGGGcCUCGGCCGgcagCGAc -3' miRNA: 3'- -CCGUugCUGUGUCU-GAGCUGGCa---GCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 33879 | 0.81 | 0.355442 |
Target: 5'- gGGCAACaGCAgccaGGACUCGGCCGUCGc -3' miRNA: 3'- -CCGUUGcUGUg---UCUGAGCUGGCAGCu -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 99024 | 0.81 | 0.370654 |
Target: 5'- gGGCGugGugAUGGACgagggacaccgccUCGACCGUCGAg -3' miRNA: 3'- -CCGUugCugUGUCUG-------------AGCUGGCAGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 2489 | 0.79 | 0.465118 |
Target: 5'- cGGCGGCGGCcucgcggGCGGGCgagucggcggcgCGGCCGUCGAg -3' miRNA: 3'- -CCGUUGCUG-------UGUCUGa-----------GCUGGCAGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 127997 | 0.79 | 0.465118 |
Target: 5'- cGGCGGCGGCcucgcggGCGGGCgagucggcggcgCGGCCGUCGAg -3' miRNA: 3'- -CCGUUGCUG-------UGUCUGa-----------GCUGGCAGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 105830 | 0.79 | 0.467921 |
Target: 5'- cGGCGGCGGCGCGGGguucauCUCGGCC-UCGGg -3' miRNA: 3'- -CCGUUGCUGUGUCU------GAGCUGGcAGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 19705 | 0.78 | 0.496408 |
Target: 5'- cGGCGcGCGGCGCcGGCgacCGGCCGUCGGg -3' miRNA: 3'- -CCGU-UGCUGUGuCUGa--GCUGGCAGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 25355 | 0.77 | 0.535544 |
Target: 5'- gGGCGGCGAcCACGGGCUCG-CCGgcguccgcgggaUCGAa -3' miRNA: 3'- -CCGUUGCU-GUGUCUGAGCuGGC------------AGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 75983 | 0.77 | 0.55552 |
Target: 5'- uGCAgGCGGCGCAG-CUCGACggCGUCGAa -3' miRNA: 3'- cCGU-UGCUGUGUCuGAGCUG--GCAGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 44209 | 0.77 | 0.561556 |
Target: 5'- cGGCGGCGGCGCGGACgggcgaacgcgugUGGCCGccgCGAg -3' miRNA: 3'- -CCGUUGCUGUGUCUGa------------GCUGGCa--GCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 29600 | 0.76 | 0.575707 |
Target: 5'- cGCGGCGGCGCGGGC-CGGCCGgCGc -3' miRNA: 3'- cCGUUGCUGUGUCUGaGCUGGCaGCu -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 155108 | 0.76 | 0.575707 |
Target: 5'- cGCGGCGGCGCGGGC-CGGCCGgCGc -3' miRNA: 3'- cCGUUGCUGUGUCUGaGCUGGCaGCu -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 87135 | 0.76 | 0.596055 |
Target: 5'- cGGCGGCGGCGCGccagggcguGCUCGGCCGcgCGAc -3' miRNA: 3'- -CCGUUGCUGUGUc--------UGAGCUGGCa-GCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 86771 | 0.76 | 0.606272 |
Target: 5'- aGCGGCGACGCGGGCgcgagggCGACCGggGGg -3' miRNA: 3'- cCGUUGCUGUGUCUGa------GCUGGCagCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 56666 | 0.76 | 0.616509 |
Target: 5'- cGGC-ACGACGCGGGCgCGG-CGUCGAc -3' miRNA: 3'- -CCGuUGCUGUGUCUGaGCUgGCAGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 107444 | 0.76 | 0.626757 |
Target: 5'- cGGCGGcCGuCGCGGACUCG-CCGcCGAu -3' miRNA: 3'- -CCGUU-GCuGUGUCUGAGCuGGCaGCU- -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 3935 | 0.75 | 0.63701 |
Target: 5'- cGGCGGCGGCACGGcGCgcgCGGCCGcCa- -3' miRNA: 3'- -CCGUUGCUGUGUC-UGa--GCUGGCaGcu -5' |
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21394 | 3' | -53 | NC_004812.1 | + | 129443 | 0.75 | 0.63701 |
Target: 5'- cGGCGGCGGCACGGcGCgcgCGGCCGcCa- -3' miRNA: 3'- -CCGUUGCUGUGUC-UGa--GCUGGCaGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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