miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 3' -53 NC_004812.1 + 549 0.68 0.94619
Target:  5'- aGGCGGCGACGCGccgcgcGACgccCGcCCGUCc- -3'
miRNA:   3'- -CCGUUGCUGUGU------CUGa--GCuGGCAGcu -5'
21394 3' -53 NC_004812.1 + 1249 0.66 0.984979
Target:  5'- gGGCGGCGcCGCGG-C-CGcCCGUUGGu -3'
miRNA:   3'- -CCGUUGCuGUGUCuGaGCuGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 1464 0.69 0.931976
Target:  5'- cGGCGGCGACGCcGGCguccUCGGCgGgCGGc -3'
miRNA:   3'- -CCGUUGCUGUGuCUG----AGCUGgCaGCU- -5'
21394 3' -53 NC_004812.1 + 2489 0.79 0.465118
Target:  5'- cGGCGGCGGCcucgcggGCGGGCgagucggcggcgCGGCCGUCGAg -3'
miRNA:   3'- -CCGUUGCUG-------UGUCUGa-----------GCUGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 2643 0.67 0.965239
Target:  5'- cGGCGGCGGCGCguccggguagAGGCgcgcgcaggCGGCC-UCGAc -3'
miRNA:   3'- -CCGUUGCUGUG----------UCUGa--------GCUGGcAGCU- -5'
21394 3' -53 NC_004812.1 + 2799 0.68 0.94619
Target:  5'- gGGCAgguagacgugGCGGCGCGcGACggCGGgcCCGUCGGc -3'
miRNA:   3'- -CCGU----------UGCUGUGU-CUGa-GCU--GGCAGCU- -5'
21394 3' -53 NC_004812.1 + 2891 0.67 0.970467
Target:  5'- cGGCGGCGGCgaGCAGGC-CGagguacucgacggcGCCGgCGAa -3'
miRNA:   3'- -CCGUUGCUG--UGUCUGaGC--------------UGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 3361 0.71 0.846022
Target:  5'- cGGCGACGACGCgcgGGGCgcaguaGGCC-UCGAg -3'
miRNA:   3'- -CCGUUGCUGUG---UCUGag----CUGGcAGCU- -5'
21394 3' -53 NC_004812.1 + 3583 0.73 0.776205
Target:  5'- cGGCGGCGGCgGCGGGCgggCGcGCCGgCGAg -3'
miRNA:   3'- -CCGUUGCUG-UGUCUGa--GC-UGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 3756 0.66 0.983142
Target:  5'- aGCAGCGGCGCGG-CggCG-CCGgCGAc -3'
miRNA:   3'- cCGUUGCUGUGUCuGa-GCuGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 3799 0.73 0.747652
Target:  5'- cGGCGGCGACgGCGGcCUCGgcGCCGcCGGc -3'
miRNA:   3'- -CCGUUGCUG-UGUCuGAGC--UGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 3935 0.75 0.63701
Target:  5'- cGGCGGCGGCACGGcGCgcgCGGCCGcCa- -3'
miRNA:   3'- -CCGUUGCUGUGUC-UGa--GCUGGCaGcu -5'
21394 3' -53 NC_004812.1 + 4200 0.7 0.897099
Target:  5'- cGGgAACGGCGgGGACcgCGGCggCGUCGGg -3'
miRNA:   3'- -CCgUUGCUGUgUCUGa-GCUG--GCAGCU- -5'
21394 3' -53 NC_004812.1 + 4641 0.67 0.968388
Target:  5'- gGGCGG-GACGCccgcgcggggagGGGCUCGccgGCCGUCGc -3'
miRNA:   3'- -CCGUUgCUGUG------------UCUGAGC---UGGCAGCu -5'
21394 3' -53 NC_004812.1 + 4975 0.67 0.968388
Target:  5'- cGGCGGCGAgGCGGGggCGACgGgucCGGg -3'
miRNA:   3'- -CCGUUGCUgUGUCUgaGCUGgCa--GCU- -5'
21394 3' -53 NC_004812.1 + 5222 0.66 0.978965
Target:  5'- aGGCcgagcCGGCGuCGGcCUCGcgGCCGUCGGg -3'
miRNA:   3'- -CCGuu---GCUGU-GUCuGAGC--UGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 5363 0.66 0.983142
Target:  5'- aGGCGGCaGACuCGGGCUCucCCG-CGGc -3'
miRNA:   3'- -CCGUUG-CUGuGUCUGAGcuGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 5887 0.7 0.876509
Target:  5'- gGGCGcgGGCGCGGGCUCaggGGCCGcCGGg -3'
miRNA:   3'- -CCGUugCUGUGUCUGAG---CUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 5946 0.66 0.983142
Target:  5'- cGGgGGCGACcgGCGG-CUCcgccCCGUCGAg -3'
miRNA:   3'- -CCgUUGCUG--UGUCuGAGcu--GGCAGCU- -5'
21394 3' -53 NC_004812.1 + 6115 0.68 0.94169
Target:  5'- gGGCGACGGCgGCGGGCU--GCCGggGAa -3'
miRNA:   3'- -CCGUUGCUG-UGUCUGAgcUGGCagCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.