miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 3' -53 NC_004812.1 + 130731 0.73 0.776205
Target:  5'- aGGCcgAGCGGCGuCGGcCUCGcgGCCGUCGGg -3'
miRNA:   3'- -CCG--UUGCUGU-GUCuGAGC--UGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 77538 0.74 0.712202
Target:  5'- gGGCAGCGACucgaggagcugcaccACGGGCaCGACCGgcgCGGa -3'
miRNA:   3'- -CCGUUGCUG---------------UGUCUGaGCUGGCa--GCU- -5'
21394 3' -53 NC_004812.1 + 26111 0.73 0.73694
Target:  5'- cGGCAGCGcguccgggaucGCGaccgccgaccaccCGGGCUCGACgGUCGAg -3'
miRNA:   3'- -CCGUUGC-----------UGU-------------GUCUGAGCUGgCAGCU- -5'
21394 3' -53 NC_004812.1 + 45509 0.73 0.737918
Target:  5'- gGGCAGCcacaGGCGCgaGGGCUCG-CCGUCGc -3'
miRNA:   3'- -CCGUUG----CUGUG--UCUGAGCuGGCAGCu -5'
21394 3' -53 NC_004812.1 + 68562 0.73 0.747652
Target:  5'- cGCGagACGACGCGGACggGACCG-CGGg -3'
miRNA:   3'- cCGU--UGCUGUGUCUGagCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 129307 0.73 0.747652
Target:  5'- cGGCGGCGACgGCGGcCUCGgcGCCGcCGGc -3'
miRNA:   3'- -CCGUUGCUG-UGUCuGAGC--UGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 56364 0.73 0.766804
Target:  5'- aGGUAGCGcCGCAG-CUCGuugUCGUCGAg -3'
miRNA:   3'- -CCGUUGCuGUGUCuGAGCu--GGCAGCU- -5'
21394 3' -53 NC_004812.1 + 35583 0.73 0.766804
Target:  5'- cGGCGGgGGCACccGACggCGACCGcCGAg -3'
miRNA:   3'- -CCGUUgCUGUGu-CUGa-GCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 96722 0.73 0.766804
Target:  5'- cGGCGGCGAUA-GGGCUCG-CCGUgGGc -3'
miRNA:   3'- -CCGUUGCUGUgUCUGAGCuGGCAgCU- -5'
21394 3' -53 NC_004812.1 + 97434 0.74 0.7082
Target:  5'- cGGCGACGGCAUcaAGGCcugccugCGcCCGUCGGa -3'
miRNA:   3'- -CCGUUGCUGUG--UCUGa------GCuGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 123572 0.75 0.647259
Target:  5'- aGGCGgcGCGGC-CGGGCUCGAgucguCCGUCGu -3'
miRNA:   3'- -CCGU--UGCUGuGUCUGAGCU-----GGCAGCu -5'
21394 3' -53 NC_004812.1 + 129443 0.75 0.63701
Target:  5'- cGGCGGCGGCACGGcGCgcgCGGCCGcCa- -3'
miRNA:   3'- -CCGUUGCUGUGUC-UGa--GCUGGCaGcu -5'
21394 3' -53 NC_004812.1 + 33879 0.81 0.355442
Target:  5'- gGGCAACaGCAgccaGGACUCGGCCGUCGc -3'
miRNA:   3'- -CCGUUGcUGUg---UCUGAGCUGGCAGCu -5'
21394 3' -53 NC_004812.1 + 99024 0.81 0.370654
Target:  5'- gGGCGugGugAUGGACgagggacaccgccUCGACCGUCGAg -3'
miRNA:   3'- -CCGUugCugUGUCUG-------------AGCUGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 127997 0.79 0.465118
Target:  5'- cGGCGGCGGCcucgcggGCGGGCgagucggcggcgCGGCCGUCGAg -3'
miRNA:   3'- -CCGUUGCUG-------UGUCUGa-----------GCUGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 19705 0.78 0.496408
Target:  5'- cGGCGcGCGGCGCcGGCgacCGGCCGUCGGg -3'
miRNA:   3'- -CCGU-UGCUGUGuCUGa--GCUGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 25355 0.77 0.535544
Target:  5'- gGGCGGCGAcCACGGGCUCG-CCGgcguccgcgggaUCGAa -3'
miRNA:   3'- -CCGUUGCU-GUGUCUGAGCuGGC------------AGCU- -5'
21394 3' -53 NC_004812.1 + 75983 0.77 0.55552
Target:  5'- uGCAgGCGGCGCAG-CUCGACggCGUCGAa -3'
miRNA:   3'- cCGU-UGCUGUGUCuGAGCUG--GCAGCU- -5'
21394 3' -53 NC_004812.1 + 155108 0.76 0.575707
Target:  5'- cGCGGCGGCGCGGGC-CGGCCGgCGc -3'
miRNA:   3'- cCGUUGCUGUGUCUGaGCUGGCaGCu -5'
21394 3' -53 NC_004812.1 + 107444 0.76 0.626757
Target:  5'- cGGCGGcCGuCGCGGACUCG-CCGcCGAu -3'
miRNA:   3'- -CCGUU-GCuGUGUCUGAGCuGGCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.