miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 3' -53 NC_004812.1 + 148939 0.66 0.978278
Target:  5'- cGGCGACGACGguGG-UCGGggcgcgagagcgggUCGUCGGc -3'
miRNA:   3'- -CCGUUGCUGUguCUgAGCU--------------GGCAGCU- -5'
21394 3' -53 NC_004812.1 + 56918 0.66 0.98093
Target:  5'- aGGCGccgccgcACGGCGCGGACcuggaGGgCGUUGAg -3'
miRNA:   3'- -CCGU-------UGCUGUGUCUGag---CUgGCAGCU- -5'
21394 3' -53 NC_004812.1 + 98409 0.66 0.98114
Target:  5'- gGGCGGCGcCGCAGcgucucgguGCggCGGCCG-CGGg -3'
miRNA:   3'- -CCGUUGCuGUGUC---------UGa-GCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 122458 0.66 0.978965
Target:  5'- cGGCGGgGGCGCGGGCgccccuggCGGgCGcCGGg -3'
miRNA:   3'- -CCGUUgCUGUGUCUGa-------GCUgGCaGCU- -5'
21394 3' -53 NC_004812.1 + 72485 0.66 0.98114
Target:  5'- gGGCGGCGGCGCcucGGGgUCGgggggcgcgccGCCGcCGGg -3'
miRNA:   3'- -CCGUUGCUGUG---UCUgAGC-----------UGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 115251 0.66 0.97661
Target:  5'- -cCAACGAgGCcucgguucgGGACUCGagGCCGUCGu -3'
miRNA:   3'- ccGUUGCUgUG---------UCUGAGC--UGGCAGCu -5'
21394 3' -53 NC_004812.1 + 155736 0.66 0.978965
Target:  5'- gGGgGGCGcGCGCGGGCggggcucgCGGCCG-CGGg -3'
miRNA:   3'- -CCgUUGC-UGUGUCUGa-------GCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 15142 0.66 0.97661
Target:  5'- cGGCGACGuCGCAGcCgUCG-CCGagCGAg -3'
miRNA:   3'- -CCGUUGCuGUGUCuG-AGCuGGCa-GCU- -5'
21394 3' -53 NC_004812.1 + 155680 0.66 0.97661
Target:  5'- cGGgAGCGcCgGCGGGCUCGGCgCGcgCGAg -3'
miRNA:   3'- -CCgUUGCuG-UGUCUGAGCUG-GCa-GCU- -5'
21394 3' -53 NC_004812.1 + 86412 0.66 0.97661
Target:  5'- cGGUGACGACcgACGGAacCUCGucCUGUCGc -3'
miRNA:   3'- -CCGUUGCUG--UGUCU--GAGCu-GGCAGCu -5'
21394 3' -53 NC_004812.1 + 18110 0.66 0.97661
Target:  5'- cGCgGACGACGCGGcGCUCGuACCGcUCc- -3'
miRNA:   3'- cCG-UUGCUGUGUC-UGAGC-UGGC-AGcu -5'
21394 3' -53 NC_004812.1 + 154105 0.66 0.978965
Target:  5'- cGGCcGCGcCGCcGACUCGcCCGcccgCGAg -3'
miRNA:   3'- -CCGuUGCuGUGuCUGAGCuGGCa---GCU- -5'
21394 3' -53 NC_004812.1 + 16127 0.66 0.978965
Target:  5'- cGGaccuGGCGACGCAGcuGCgCGACCGggacaUCGAg -3'
miRNA:   3'- -CCg---UUGCUGUGUC--UGaGCUGGC-----AGCU- -5'
21394 3' -53 NC_004812.1 + 64774 0.66 0.978965
Target:  5'- -aCGGCGACACGGACU---CCGUCu- -3'
miRNA:   3'- ccGUUGCUGUGUCUGAgcuGGCAGcu -5'
21394 3' -53 NC_004812.1 + 34233 0.66 0.98114
Target:  5'- cGCAACGGCGCcucGGACgaccucauggUCG-CCGUCa- -3'
miRNA:   3'- cCGUUGCUGUG---UCUG----------AGCuGGCAGcu -5'
21394 3' -53 NC_004812.1 + 107543 0.66 0.97661
Target:  5'- gGGCGACGAgCACgucggcGGACUUGuCCGcCGc -3'
miRNA:   3'- -CCGUUGCU-GUG------UCUGAGCuGGCaGCu -5'
21394 3' -53 NC_004812.1 + 75772 0.66 0.98114
Target:  5'- cGGCGGCGGCGCcGAacgCGgGCCcccaGUCGAu -3'
miRNA:   3'- -CCGUUGCUGUGuCUga-GC-UGG----CAGCU- -5'
21394 3' -53 NC_004812.1 + 137201 0.66 0.98666
Target:  5'- cGGCcACG-CGCAGGCcgUGACCG-CGc -3'
miRNA:   3'- -CCGuUGCuGUGUCUGa-GCUGGCaGCu -5'
21394 3' -53 NC_004812.1 + 79547 0.66 0.98114
Target:  5'- -aCGACGACGCGGcGCUCGACgaacggcuCGUCc- -3'
miRNA:   3'- ccGUUGCUGUGUC-UGAGCUG--------GCAGcu -5'
21394 3' -53 NC_004812.1 + 132994 0.66 0.98114
Target:  5'- cGGCGGCcGCGCGGA--CGACCGgggCGc -3'
miRNA:   3'- -CCGUUGcUGUGUCUgaGCUGGCa--GCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.