miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21397 3' -54.2 NC_004812.1 + 76851 0.66 0.936539
Target:  5'- cGCGGCGUCGGgcaggcacguCCACCccccggGGAUGUCc-- -3'
miRNA:   3'- -CGCCGUAGUC----------GGUGGa-----CCUGUAGuuc -5'
21397 3' -54.2 NC_004812.1 + 101500 0.66 0.950274
Target:  5'- gGCGGUAgaAGaCCGCCgGGuCGUCGGGc -3'
miRNA:   3'- -CGCCGUagUC-GGUGGaCCuGUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 28933 0.66 0.936539
Target:  5'- cGCGGaau--GCCGCCcggGGACGUCGu- -3'
miRNA:   3'- -CGCCguaguCGGUGGa--CCUGUAGUuc -5'
21397 3' -54.2 NC_004812.1 + 139404 0.66 0.94136
Target:  5'- aGCGGCAcCGGCCGCgaacGACAcCGGGg -3'
miRNA:   3'- -CGCCGUaGUCGGUGgac-CUGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 563 0.66 0.945938
Target:  5'- cCGGCGcgcgCGGCCGCgUGGAgCcgCGGGc -3'
miRNA:   3'- cGCCGUa---GUCGGUGgACCU-GuaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 145313 0.66 0.94136
Target:  5'- cGCGGCGccccgcgCGGCgCGCCUcguGGGCGugcUCGGGg -3'
miRNA:   3'- -CGCCGUa------GUCG-GUGGA---CCUGU---AGUUC- -5'
21397 3' -54.2 NC_004812.1 + 45405 0.66 0.945938
Target:  5'- cGCGGUGUCGcCCACCgaagcagGGGCgcgguggccaccGUCAGGu -3'
miRNA:   3'- -CGCCGUAGUcGGUGGa------CCUG------------UAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 129551 0.66 0.936539
Target:  5'- gGCGGCggCGGCgGCC-GcGGCGUCGu- -3'
miRNA:   3'- -CGCCGuaGUCGgUGGaC-CUGUAGUuc -5'
21397 3' -54.2 NC_004812.1 + 56172 0.66 0.945938
Target:  5'- aUGGCGUaCAGCCcgggcguggugGCCUGGAagaCGUCGu- -3'
miRNA:   3'- cGCCGUA-GUCGG-----------UGGACCU---GUAGUuc -5'
21397 3' -54.2 NC_004812.1 + 5783 0.66 0.945938
Target:  5'- cGCGGgGUCGGCgccCGCCUcGGGCugCGGGg -3'
miRNA:   3'- -CGCCgUAGUCG---GUGGA-CCUGuaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 90293 0.66 0.958235
Target:  5'- cGCgGGCGaCGGgCGCCUGGGCGccgccagccgCGAGg -3'
miRNA:   3'- -CG-CCGUaGUCgGUGGACCUGUa---------GUUC- -5'
21397 3' -54.2 NC_004812.1 + 95675 0.66 0.945938
Target:  5'- uCGGCGcuguacggCAGCCGCgUGGuCAUUggGu -3'
miRNA:   3'- cGCCGUa-------GUCGGUGgACCuGUAGuuC- -5'
21397 3' -54.2 NC_004812.1 + 30354 0.66 0.936539
Target:  5'- aGCGGCGUCgcgucgAGCCGCUcgGcGGCcggGUCGGGg -3'
miRNA:   3'- -CGCCGUAG------UCGGUGGa-C-CUG---UAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 129164 0.66 0.94136
Target:  5'- cGCGucuGCGUCGGCCAgCaggGGGCG-CAGGc -3'
miRNA:   3'- -CGC---CGUAGUCGGUgGa--CCUGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 55622 0.66 0.94136
Target:  5'- gGCGGUccgcGUaCAGCCGCCggcgcucgcGGACGUCc-- -3'
miRNA:   3'- -CGCCG----UA-GUCGGUGGa--------CCUGUAGuuc -5'
21397 3' -54.2 NC_004812.1 + 98391 0.66 0.94136
Target:  5'- gGCGGCG-CGGCgGCCgcgGGGCggCGc- -3'
miRNA:   3'- -CGCCGUaGUCGgUGGa--CCUGuaGUuc -5'
21397 3' -54.2 NC_004812.1 + 100647 0.66 0.950274
Target:  5'- gGCGGCGcgAGCCgcgccgggccggGCCUcGGCGUCGGGc -3'
miRNA:   3'- -CGCCGUagUCGG------------UGGAcCUGUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 56892 0.66 0.950274
Target:  5'- -gGGCcugugCGGCCAgcCCUGGGCG-CAGGc -3'
miRNA:   3'- cgCCGua---GUCGGU--GGACCUGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 101694 0.66 0.936539
Target:  5'- cGCGGCAggCGGCCcuCCaGGAUcUCGAu -3'
miRNA:   3'- -CGCCGUa-GUCGGu-GGaCCUGuAGUUc -5'
21397 3' -54.2 NC_004812.1 + 54974 0.66 0.954372
Target:  5'- aGCGGUAg-AGCC-CCUcGGGgGUCGGGc -3'
miRNA:   3'- -CGCCGUagUCGGuGGA-CCUgUAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.