miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21397 3' -54.2 NC_004812.1 + 563 0.66 0.945938
Target:  5'- cCGGCGcgcgCGGCCGCgUGGAgCcgCGGGc -3'
miRNA:   3'- cGCCGUa---GUCGGUGgACCU-GuaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 583 0.68 0.90245
Target:  5'- cGCGGCG-CGGCCcccgGCCccGGGCGUCc-- -3'
miRNA:   3'- -CGCCGUaGUCGG----UGGa-CCUGUAGuuc -5'
21397 3' -54.2 NC_004812.1 + 2163 0.72 0.672569
Target:  5'- cGCGGCggCGGCCACCUccacggcgGcGGCGUCGu- -3'
miRNA:   3'- -CGCCGuaGUCGGUGGA--------C-CUGUAGUuc -5'
21397 3' -54.2 NC_004812.1 + 2485 0.66 0.954372
Target:  5'- cCGGCggCGGCgGCCUcgcGGGCGggCGAGu -3'
miRNA:   3'- cGCCGuaGUCGgUGGA---CCUGUa-GUUC- -5'
21397 3' -54.2 NC_004812.1 + 2751 0.68 0.889144
Target:  5'- cGCGGCG--GGCCAgC-GGACGUCGc- -3'
miRNA:   3'- -CGCCGUagUCGGUgGaCCUGUAGUuc -5'
21397 3' -54.2 NC_004812.1 + 3171 0.73 0.620687
Target:  5'- uCGGgGUCGGCgACCUGGcGCAUCcAGg -3'
miRNA:   3'- cGCCgUAGUCGgUGGACC-UGUAGuUC- -5'
21397 3' -54.2 NC_004812.1 + 3439 0.79 0.339883
Target:  5'- cGCGGCGcCAGCCGCCgcGGGgGUCGGGc -3'
miRNA:   3'- -CGCCGUaGUCGGUGGa-CCUgUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 3656 0.66 0.94136
Target:  5'- cGCGucuGCGUCGGCCAgCaggGGGCG-CAGGc -3'
miRNA:   3'- -CGC---CGUAGUCGGUgGa--CCUGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 4042 0.66 0.936539
Target:  5'- gGCGGCggCGGCgGCC-GcGGCGUCGu- -3'
miRNA:   3'- -CGCCGuaGUCGgUGGaC-CUGUAGUuc -5'
21397 3' -54.2 NC_004812.1 + 5149 0.68 0.895916
Target:  5'- gGCGGCGUCGGCCcgcgguCC-GGGCc-CGAGu -3'
miRNA:   3'- -CGCCGUAGUCGGu-----GGaCCUGuaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 5230 0.69 0.851884
Target:  5'- cCGGCGUCGGCCucgcgGCCgucgGGGCGcgcCGAGu -3'
miRNA:   3'- cGCCGUAGUCGG-----UGGa---CCUGUa--GUUC- -5'
21397 3' -54.2 NC_004812.1 + 5502 0.66 0.958235
Target:  5'- gGCGGCggCGGCCGCggGGaagGCGUCc-- -3'
miRNA:   3'- -CGCCGuaGUCGGUGgaCC---UGUAGuuc -5'
21397 3' -54.2 NC_004812.1 + 5638 0.67 0.933528
Target:  5'- cGCGGCAUgGucucuuccuccccgcGuCCGCCgggGGGCGUCGGa -3'
miRNA:   3'- -CGCCGUAgU---------------C-GGUGGa--CCUGUAGUUc -5'
21397 3' -54.2 NC_004812.1 + 5783 0.66 0.945938
Target:  5'- cGCGGgGUCGGCgccCGCCUcGGGCugCGGGg -3'
miRNA:   3'- -CGCCgUAGUCG---GUGGA-CCUGuaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 6355 0.67 0.908743
Target:  5'- gGCGGCAggCGcGCCGCCcgccagGGACG-CGGGc -3'
miRNA:   3'- -CGCCGUa-GU-CGGUGGa-----CCUGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 10830 0.68 0.882139
Target:  5'- cGCaGGUcuUCGGCCacGCCgauggGGACGUCGGGu -3'
miRNA:   3'- -CG-CCGu-AGUCGG--UGGa----CCUGUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 13240 0.71 0.763007
Target:  5'- cGCGGuCGUCAGCUcguaccgggagGCCUccGACGUCGGGg -3'
miRNA:   3'- -CGCC-GUAGUCGG-----------UGGAc-CUGUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 14614 0.69 0.827017
Target:  5'- gGUGGCGUUGGCCgucuccaccACCUcGGGCGggagCAGGg -3'
miRNA:   3'- -CGCCGUAGUCGG---------UGGA-CCUGUa---GUUC- -5'
21397 3' -54.2 NC_004812.1 + 15761 0.69 0.843791
Target:  5'- cGCGcCGUCAGCCGggcCCUGGGCGagGAc -3'
miRNA:   3'- -CGCcGUAGUCGGU---GGACCUGUagUUc -5'
21397 3' -54.2 NC_004812.1 + 16132 0.7 0.800507
Target:  5'- cUGGCGacgCAGCUgcgcgACCgGGACAUCGAGc -3'
miRNA:   3'- cGCCGUa--GUCGG-----UGGaCCUGUAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.