miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21397 3' -54.2 NC_004812.1 + 71216 0.71 0.772586
Target:  5'- gGCGGCGagcgggCGGCCGCgaGGGCGcggCGGGg -3'
miRNA:   3'- -CGCCGUa-----GUCGGUGgaCCUGUa--GUUC- -5'
21397 3' -54.2 NC_004812.1 + 44033 0.71 0.733592
Target:  5'- gGCGGCcgCGcGUCACCUGcGCGUCGGa -3'
miRNA:   3'- -CGCCGuaGU-CGGUGGACcUGUAGUUc -5'
21397 3' -54.2 NC_004812.1 + 79164 0.71 0.733592
Target:  5'- gGUGGUGUCGGCCGgC-GGACAggucuUCGAGg -3'
miRNA:   3'- -CGCCGUAGUCGGUgGaCCUGU-----AGUUC- -5'
21397 3' -54.2 NC_004812.1 + 20727 0.71 0.743501
Target:  5'- gGC-GCAUCAG-CGCgaGGACGUCGGGg -3'
miRNA:   3'- -CGcCGUAGUCgGUGgaCCUGUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 119504 0.71 0.743501
Target:  5'- gGCGGCGUCcgcgGGCCGCC-GGGCGcccCGGGc -3'
miRNA:   3'- -CGCCGUAG----UCGGUGGaCCUGUa--GUUC- -5'
21397 3' -54.2 NC_004812.1 + 124466 0.71 0.743501
Target:  5'- gGCGGCcgCGgcGCCGCCcGGGCGggGAGg -3'
miRNA:   3'- -CGCCGuaGU--CGGUGGaCCUGUagUUC- -5'
21397 3' -54.2 NC_004812.1 + 24769 0.71 0.743501
Target:  5'- cGCGGCGUCGauGCgCACCggGGugAugaUCAGGg -3'
miRNA:   3'- -CGCCGUAGU--CG-GUGGa-CCugU---AGUUC- -5'
21397 3' -54.2 NC_004812.1 + 52061 0.71 0.753309
Target:  5'- cGCgGGCAUCGGCCACC-GGGgGUg--- -3'
miRNA:   3'- -CG-CCGUAGUCGGUGGaCCUgUAguuc -5'
21397 3' -54.2 NC_004812.1 + 117627 0.71 0.763007
Target:  5'- gGCGGCGcgGGCCGCC-GGGCGcggCGGGg -3'
miRNA:   3'- -CGCCGUagUCGGUGGaCCUGUa--GUUC- -5'
21397 3' -54.2 NC_004812.1 + 19640 0.72 0.693145
Target:  5'- cGCGGCgacGUgGGCCGCCaGGGCGagGGGg -3'
miRNA:   3'- -CGCCG---UAgUCGGUGGaCCUGUagUUC- -5'
21397 3' -54.2 NC_004812.1 + 127672 0.72 0.672569
Target:  5'- cGCGGCggCGGCCACCUccacggcgGcGGCGUCGu- -3'
miRNA:   3'- -CGCCGuaGUCGGUGGA--------C-CUGUAGUuc -5'
21397 3' -54.2 NC_004812.1 + 143556 0.72 0.672569
Target:  5'- gGCGGCccUGGCgCGCCUGGGCGaCGAGc -3'
miRNA:   3'- -CGCCGuaGUCG-GUGGACCUGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 128947 0.79 0.339883
Target:  5'- cGCGGCGcCAGCCGCCgcGGGgGUCGGGc -3'
miRNA:   3'- -CGCCGUaGUCGGUGGa-CCUgUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 39092 0.78 0.400655
Target:  5'- cGCGGCA-CGGCCACCgacggccgcgucgcGGugGUCAGGu -3'
miRNA:   3'- -CGCCGUaGUCGGUGGa-------------CCugUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 148931 0.76 0.46036
Target:  5'- gGCGGCGUCGGCgACgacGGugGUCGGGg -3'
miRNA:   3'- -CGCCGUAGUCGgUGga-CCugUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 81803 0.74 0.569017
Target:  5'- gGCGGCGUCGGCC-CC-GGGCucCAGGa -3'
miRNA:   3'- -CGCCGUAGUCGGuGGaCCUGuaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 130737 0.74 0.569017
Target:  5'- aGCGGCGUCGGCCucgcgGCCgucgGGGCGcgcCGAGu -3'
miRNA:   3'- -CGCCGUAGUCGG-----UGGa---CCUGUa--GUUC- -5'
21397 3' -54.2 NC_004812.1 + 136301 0.73 0.610305
Target:  5'- cGCGGCccCGGgCG-CUGGACGUCAGGa -3'
miRNA:   3'- -CGCCGuaGUCgGUgGACCUGUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 128680 0.73 0.620687
Target:  5'- uCGGgGUCGGCgACCUGGcGCAUCcAGg -3'
miRNA:   3'- cGCCgUAGUCGgUGGACC-UGUAGuUC- -5'
21397 3' -54.2 NC_004812.1 + 121283 0.73 0.662225
Target:  5'- cGCGGCccggGGCCGCCUcGGGCAggCGAGu -3'
miRNA:   3'- -CGCCGuag-UCGGUGGA-CCUGUa-GUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.