Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 6198 | 0.66 | 0.879927 |
Target: 5'- ----cCCGggGCGcccGGCGGCCCgcgGACg -3' miRNA: 3'- uauaaGGCgaCGCa--CUGCCGGGa--CUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 130988 | 0.66 | 0.849635 |
Target: 5'- cUGUUCCGCuacUGCGUGGgGcGCgCCgacGACg -3' miRNA: 3'- uAUAAGGCG---ACGCACUgC-CG-GGa--CUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 109709 | 0.66 | 0.872677 |
Target: 5'- ----gCCGCcGCGcUGGCGGCCgCgcugGGCa -3' miRNA: 3'- uauaaGGCGaCGC-ACUGCCGG-Ga---CUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 119867 | 0.66 | 0.872677 |
Target: 5'- ----aCCaGCUGCG-GACGGgCCUGcACc -3' miRNA: 3'- uauaaGG-CGACGCaCUGCCgGGAC-UG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 37099 | 0.66 | 0.879927 |
Target: 5'- ----cCCGggGCGcccGGCGGCCCgcgGACg -3' miRNA: 3'- uauaaGGCgaCGCa--CUGCCGGGa--CUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 130564 | 0.66 | 0.849635 |
Target: 5'- ---gUCUGCUGCGgggcguccGGgGGCCCcugGACg -3' miRNA: 3'- uauaAGGCGACGCa-------CUgCCGGGa--CUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 96261 | 0.66 | 0.849635 |
Target: 5'- ---gUCCGagGCGcgGGCGGgCCUGGCg -3' miRNA: 3'- uauaAGGCgaCGCa-CUGCCgGGACUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 79619 | 0.66 | 0.857524 |
Target: 5'- ----gCCGCgGUGagGGCGGCCgUGGCc -3' miRNA: 3'- uauaaGGCGaCGCa-CUGCCGGgACUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 103402 | 0.66 | 0.872677 |
Target: 5'- ----cCUGCUccGCGUaGACGGCCCagaggaucucccUGACg -3' miRNA: 3'- uauaaGGCGA--CGCA-CUGCCGGG------------ACUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 128854 | 0.66 | 0.857524 |
Target: 5'- ----cCCGCcccUGCGggccgcgGGCGGCCCgcUGACc -3' miRNA: 3'- uauaaGGCG---ACGCa------CUGCCGGG--ACUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 86078 | 0.66 | 0.857524 |
Target: 5'- ----gUCGCaGCGcgcUGGCGGUCCUGAUc -3' miRNA: 3'- uauaaGGCGaCGC---ACUGCCGGGACUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 23696 | 0.67 | 0.82479 |
Target: 5'- ---gUCCGCUGCGUG-CGcGCCUa--- -3' miRNA: 3'- uauaAGGCGACGCACuGC-CGGGacug -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 94348 | 0.67 | 0.816142 |
Target: 5'- ---cUCCGCgcGCGgcGCGGCCCcGGCg -3' miRNA: 3'- uauaAGGCGa-CGCacUGCCGGGaCUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 59475 | 0.67 | 0.816142 |
Target: 5'- ---gUCUcCUGCaUGACGGCCCgGGCc -3' miRNA: 3'- uauaAGGcGACGcACUGCCGGGaCUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 94096 | 0.67 | 0.807324 |
Target: 5'- ----cCCGCUcGCGUGcgcccUGGCCCUGGu -3' miRNA: 3'- uauaaGGCGA-CGCACu----GCCGGGACUg -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 75196 | 0.67 | 0.798345 |
Target: 5'- cGUGUgCCGCgaGCGccucccgcagGGCGGCCgUGACg -3' miRNA: 3'- -UAUAaGGCGa-CGCa---------CUGCCGGgACUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 33849 | 0.67 | 0.798345 |
Target: 5'- gGUGUUCCGCagcguccGCGUGGCGGUggagGGCa -3' miRNA: 3'- -UAUAAGGCGa------CGCACUGCCGgga-CUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 43157 | 0.67 | 0.83326 |
Target: 5'- ---gUCCGCgacacCGcGGCGGCCCgGGCg -3' miRNA: 3'- uauaAGGCGac---GCaCUGCCGGGaCUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 100137 | 0.67 | 0.83326 |
Target: 5'- ---gUCUGCuucgaggagcugUGCGUGACGGCCaaccagggGGCg -3' miRNA: 3'- uauaAGGCG------------ACGCACUGCCGGga------CUG- -5' |
|||||||
21398 | 3' | -56.5 | NC_004812.1 | + | 73947 | 0.67 | 0.807324 |
Target: 5'- ----cCUGCUGCaccagacGugGGCCCUGAUc -3' miRNA: 3'- uauaaGGCGACGca-----CugCCGGGACUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home