miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21398 3' -56.5 NC_004812.1 + 125963 1.08 0.002524
Target:  5'- gAUAUUCCGCUGCGUGACGGCCCUGACg -3'
miRNA:   3'- -UAUAAGGCGACGCACUGCCGGGACUG- -5'
21398 3' -56.5 NC_004812.1 + 138514 0.77 0.303769
Target:  5'- cGUcgUCCGCgUGUGcGGCGGCCCgGACg -3'
miRNA:   3'- -UAuaAGGCG-ACGCaCUGCCGGGaCUG- -5'
21398 3' -56.5 NC_004812.1 + 143540 0.76 0.340708
Target:  5'- --uUUCCGCcGUGaacgaGGCGGCCCUGGCg -3'
miRNA:   3'- uauAAGGCGaCGCa----CUGCCGGGACUG- -5'
21398 3' -56.5 NC_004812.1 + 116414 0.75 0.407175
Target:  5'- ---aUCCGCUGCGggcccgcgcccugggGACGGCCUgcggGGCg -3'
miRNA:   3'- uauaAGGCGACGCa--------------CUGCCGGGa---CUG- -5'
21398 3' -56.5 NC_004812.1 + 135802 0.74 0.45113
Target:  5'- cUGUUCCgGCUGUGcGGCGGCC-UGGCg -3'
miRNA:   3'- uAUAAGG-CGACGCaCUGCCGGgACUG- -5'
21398 3' -56.5 NC_004812.1 + 98238 0.72 0.53799
Target:  5'- ---cUCCGCgggGCGgcGCGGCCCUGGa -3'
miRNA:   3'- uauaAGGCGa--CGCacUGCCGGGACUg -5'
21398 3' -56.5 NC_004812.1 + 48721 0.71 0.588698
Target:  5'- ----aCCGC-GCGUG-CGGCCCggagGACg -3'
miRNA:   3'- uauaaGGCGaCGCACuGCCGGGa---CUG- -5'
21398 3' -56.5 NC_004812.1 + 111801 0.71 0.609252
Target:  5'- -gAUUCUGCUgcGCGUGGCGaGCCaggGACu -3'
miRNA:   3'- uaUAAGGCGA--CGCACUGC-CGGga-CUG- -5'
21398 3' -56.5 NC_004812.1 + 57356 0.7 0.681319
Target:  5'- ----gCCGgUGCGUGccucCGGCCCgGACg -3'
miRNA:   3'- uauaaGGCgACGCACu---GCCGGGaCUG- -5'
21398 3' -56.5 NC_004812.1 + 95649 0.69 0.731725
Target:  5'- -aGUUCCGCUGCaagcgacccgacGUGuCGGCgCUGuACg -3'
miRNA:   3'- uaUAAGGCGACG------------CACuGCCGgGAC-UG- -5'
21398 3' -56.5 NC_004812.1 + 109941 0.69 0.731725
Target:  5'- --cUUCCgGCgcgGCGcccUGGCGGCCgUGGCg -3'
miRNA:   3'- uauAAGG-CGa--CGC---ACUGCCGGgACUG- -5'
21398 3' -56.5 NC_004812.1 + 138646 0.69 0.741581
Target:  5'- gGUGUUUCGCggaGCGcUGACGGgCCUGu- -3'
miRNA:   3'- -UAUAAGGCGa--CGC-ACUGCCgGGACug -5'
21398 3' -56.5 NC_004812.1 + 83356 0.68 0.760991
Target:  5'- -----gCGCUGC-UGGCGGCCCgccugggGGCg -3'
miRNA:   3'- uauaagGCGACGcACUGCCGGGa------CUG- -5'
21398 3' -56.5 NC_004812.1 + 80571 0.68 0.770527
Target:  5'- cUGggCCGCcGaCGUGgagGCGGCCCUGGa -3'
miRNA:   3'- uAUaaGGCGaC-GCAC---UGCCGGGACUg -5'
21398 3' -56.5 NC_004812.1 + 111246 0.68 0.770527
Target:  5'- ----aCCGCUGCaucuacgcgGUG-CGGCCCgugGGCg -3'
miRNA:   3'- uauaaGGCGACG---------CACuGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 64800 0.68 0.770527
Target:  5'- cUGUgCCGCgGCcUGACGGCcgagggCCUGACg -3'
miRNA:   3'- uAUAaGGCGaCGcACUGCCG------GGACUG- -5'
21398 3' -56.5 NC_004812.1 + 32218 0.68 0.779937
Target:  5'- ---gUCCGCggGCGguccgcgGGCGGUCCgcgGGCg -3'
miRNA:   3'- uauaAGGCGa-CGCa------CUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 1317 0.68 0.779937
Target:  5'- ---gUCCGCggGCGguccgcgGGCGGUCCgcgGGCg -3'
miRNA:   3'- uauaAGGCGa-CGCa------CUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 24470 0.68 0.788292
Target:  5'- ----cCCGCUGCaacuccaGUGGCGGCCgCUccugGACg -3'
miRNA:   3'- uauaaGGCGACG-------CACUGCCGG-GA----CUG- -5'
21398 3' -56.5 NC_004812.1 + 128173 0.68 0.789213
Target:  5'- -----gCGCUGCGU--CGGCgCCUGGCg -3'
miRNA:   3'- uauaagGCGACGCAcuGCCG-GGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.