miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21398 3' -56.5 NC_004812.1 + 6198 0.66 0.879927
Target:  5'- ----cCCGggGCGcccGGCGGCCCgcgGACg -3'
miRNA:   3'- uauaaGGCgaCGCa--CUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 59475 0.67 0.816142
Target:  5'- ---gUCUcCUGCaUGACGGCCCgGGCc -3'
miRNA:   3'- uauaAGGcGACGcACUGCCGGGaCUG- -5'
21398 3' -56.5 NC_004812.1 + 94348 0.67 0.816142
Target:  5'- ---cUCCGCgcGCGgcGCGGCCCcGGCg -3'
miRNA:   3'- uauaAGGCGa-CGCacUGCCGGGaCUG- -5'
21398 3' -56.5 NC_004812.1 + 23696 0.67 0.82479
Target:  5'- ---gUCCGCUGCGUG-CGcGCCUa--- -3'
miRNA:   3'- uauaAGGCGACGCACuGC-CGGGacug -5'
21398 3' -56.5 NC_004812.1 + 1281 0.67 0.841544
Target:  5'- ----gCCGCggGCG-GGCGGUCCgagGGCg -3'
miRNA:   3'- uauaaGGCGa-CGCaCUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 23141 0.67 0.841544
Target:  5'- ---gUCCuGCUGC-UGGCGcacagcgucagcGCCCUGGCg -3'
miRNA:   3'- uauaAGG-CGACGcACUGC------------CGGGACUG- -5'
21398 3' -56.5 NC_004812.1 + 96261 0.66 0.849635
Target:  5'- ---gUCCGagGCGcgGGCGGgCCUGGCg -3'
miRNA:   3'- uauaAGGCgaCGCa-CUGCCgGGACUG- -5'
21398 3' -56.5 NC_004812.1 + 79619 0.66 0.857524
Target:  5'- ----gCCGCgGUGagGGCGGCCgUGGCc -3'
miRNA:   3'- uauaaGGCGaCGCa-CUGCCGGgACUG- -5'
21398 3' -56.5 NC_004812.1 + 103402 0.66 0.872677
Target:  5'- ----cCUGCUccGCGUaGACGGCCCagaggaucucccUGACg -3'
miRNA:   3'- uauaaGGCGA--CGCA-CUGCCGGG------------ACUG- -5'
21398 3' -56.5 NC_004812.1 + 94096 0.67 0.807324
Target:  5'- ----cCCGCUcGCGUGcgcccUGGCCCUGGu -3'
miRNA:   3'- uauaaGGCGA-CGCACu----GCCGGGACUg -5'
21398 3' -56.5 NC_004812.1 + 75196 0.67 0.798345
Target:  5'- cGUGUgCCGCgaGCGccucccgcagGGCGGCCgUGACg -3'
miRNA:   3'- -UAUAaGGCGa-CGCa---------CUGCCGGgACUG- -5'
21398 3' -56.5 NC_004812.1 + 33849 0.67 0.798345
Target:  5'- gGUGUUCCGCagcguccGCGUGGCGGUggagGGCa -3'
miRNA:   3'- -UAUAAGGCGa------CGCACUGCCGgga-CUG- -5'
21398 3' -56.5 NC_004812.1 + 48721 0.71 0.588698
Target:  5'- ----aCCGC-GCGUG-CGGCCCggagGACg -3'
miRNA:   3'- uauaaGGCGaCGCACuGCCGGGa---CUG- -5'
21398 3' -56.5 NC_004812.1 + 111801 0.71 0.609252
Target:  5'- -gAUUCUGCUgcGCGUGGCGaGCCaggGACu -3'
miRNA:   3'- uaUAAGGCGA--CGCACUGC-CGGga-CUG- -5'
21398 3' -56.5 NC_004812.1 + 95649 0.69 0.731725
Target:  5'- -aGUUCCGCUGCaagcgacccgacGUGuCGGCgCUGuACg -3'
miRNA:   3'- uaUAAGGCGACG------------CACuGCCGgGAC-UG- -5'
21398 3' -56.5 NC_004812.1 + 109941 0.69 0.731725
Target:  5'- --cUUCCgGCgcgGCGcccUGGCGGCCgUGGCg -3'
miRNA:   3'- uauAAGG-CGa--CGC---ACUGCCGGgACUG- -5'
21398 3' -56.5 NC_004812.1 + 64800 0.68 0.770527
Target:  5'- cUGUgCCGCgGCcUGACGGCcgagggCCUGACg -3'
miRNA:   3'- uAUAaGGCGaCGcACUGCCG------GGACUG- -5'
21398 3' -56.5 NC_004812.1 + 111246 0.68 0.770527
Target:  5'- ----aCCGCUGCaucuacgcgGUG-CGGCCCgugGGCg -3'
miRNA:   3'- uauaaGGCGACG---------CACuGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 1317 0.68 0.779937
Target:  5'- ---gUCCGCggGCGguccgcgGGCGGUCCgcgGGCg -3'
miRNA:   3'- uauaAGGCGa-CGCa------CUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 24470 0.68 0.788292
Target:  5'- ----cCCGCUGCaacuccaGUGGCGGCCgCUccugGACg -3'
miRNA:   3'- uauaaGGCGACG-------CACUGCCGG-GA----CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.