miRNA display CGI


Results 1 - 20 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 5' -63.6 NC_004812.1 + 7900 0.66 0.588101
Target:  5'- cGAGGGucGCccgcaggugUCGGGGGCUGCGGCgcgcgCCGg -3'
miRNA:   3'- uCUCCU--CG---------AGCCCCUGGCGCUGg----GGC- -5'
21402 5' -63.6 NC_004812.1 + 32679 0.66 0.587145
Target:  5'- gGGAGGAGgC-CGggccggcccGGGACCGCGGgcgccagcaccucCCCCa -3'
miRNA:   3'- -UCUCCUC-GaGC---------CCCUGGCGCU-------------GGGGc -5'
21402 5' -63.6 NC_004812.1 + 101020 0.66 0.578547
Target:  5'- cGAGGcAGCggaucgccUCGGGGuGCaCGCGggccagcaggGCCCCGg -3'
miRNA:   3'- uCUCC-UCG--------AGCCCC-UG-GCGC----------UGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 49250 0.66 0.588101
Target:  5'- cGGGGGGCgUCcGGGGCCGacucCGGCgCCGu -3'
miRNA:   3'- uCUCCUCG-AGcCCCUGGC----GCUGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 45267 0.66 0.578547
Target:  5'- uGGGGGGCccgCGGGGuCgGCG-CCgCCGc -3'
miRNA:   3'- uCUCCUCGa--GCCCCuGgCGCuGG-GGC- -5'
21402 5' -63.6 NC_004812.1 + 1216 0.66 0.577593
Target:  5'- cGGGGGcGGCgccgCGGGGGCUccuccccgcccggGCGGCgCCGc -3'
miRNA:   3'- -UCUCC-UCGa---GCCCCUGG-------------CGCUGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 25923 0.66 0.626542
Target:  5'- cGGAgucGGAGUcggagUCGGaGGACCG-GGCCCgGa -3'
miRNA:   3'- -UCU---CCUCG-----AGCC-CCUGGCgCUGGGgC- -5'
21402 5' -63.6 NC_004812.1 + 73523 0.66 0.578547
Target:  5'- aGGAGGccgguGGC-CGGGGGCgggcccgcaGCGACCgCGg -3'
miRNA:   3'- -UCUCC-----UCGaGCCCCUGg--------CGCUGGgGC- -5'
21402 5' -63.6 NC_004812.1 + 76180 0.66 0.568077
Target:  5'- -cAGGGcccggccGCUCGGGGACgG-GuCCCCGg -3'
miRNA:   3'- ucUCCU-------CGAGCCCCUGgCgCuGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 6339 0.66 0.588101
Target:  5'- aGGAGGGGCagcaGGGGGCgGCaGGCgCgCCGc -3'
miRNA:   3'- -UCUCCUCGag--CCCCUGgCG-CUG-G-GGC- -5'
21402 5' -63.6 NC_004812.1 + 77732 0.66 0.578547
Target:  5'- --cGGGGCUCaGGGGGugggggcggccuCCGCccuCCCCGg -3'
miRNA:   3'- ucuCCUCGAG-CCCCU------------GGCGcu-GGGGC- -5'
21402 5' -63.6 NC_004812.1 + 76470 0.66 0.588101
Target:  5'- cGAGGAagGC-CaGGGGGCaCGCcgGAUCCCGg -3'
miRNA:   3'- uCUCCU--CGaG-CCCCUG-GCG--CUGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 5072 0.66 0.578547
Target:  5'- -cGGGAGaCUCgGGGGGCCG-GGgUCCGg -3'
miRNA:   3'- ucUCCUC-GAG-CCCCUGGCgCUgGGGC- -5'
21402 5' -63.6 NC_004812.1 + 154534 0.66 0.569027
Target:  5'- cGAGGAcugGUagacgCGGGGGgCGCGcCCCCu -3'
miRNA:   3'- uCUCCU---CGa----GCCCCUgGCGCuGGGGc -5'
21402 5' -63.6 NC_004812.1 + 30109 0.66 0.578547
Target:  5'- cGuGGGGCUgCGGGGcgcacgucCCGCaGCCCCc -3'
miRNA:   3'- uCuCCUCGA-GCCCCu-------GGCGcUGGGGc -5'
21402 5' -63.6 NC_004812.1 + 148825 0.66 0.569027
Target:  5'- gGGAGGGGagggcgaGGGGugCGCGgggcucACCUCGu -3'
miRNA:   3'- -UCUCCUCgag----CCCCugGCGC------UGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 99446 0.66 0.568077
Target:  5'- --uGGAGg-CGGuGGACCGCGucgcgcaGCCCCa -3'
miRNA:   3'- ucuCCUCgaGCC-CCUGGCGC-------UGGGGc -5'
21402 5' -63.6 NC_004812.1 + 5711 0.66 0.588101
Target:  5'- cGGGGGGGCg-GGGGucuGCCGCGggaggaggGCgCCGg -3'
miRNA:   3'- -UCUCCUCGagCCCC---UGGCGC--------UGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 72354 0.66 0.588101
Target:  5'- aGGGGGGGCggGGGGucucCCGCGuCgUCGg -3'
miRNA:   3'- -UCUCCUCGagCCCCu---GGCGCuGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 58048 0.66 0.569027
Target:  5'- cAGAGcGAGCUCucguGGGCCcCGGCgCCCGg -3'
miRNA:   3'- -UCUC-CUCGAGcc--CCUGGcGCUG-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.