miRNA display CGI


Results 1 - 20 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 5' -63.6 NC_004812.1 + 103 0.7 0.3769
Target:  5'- --cGGGGCgcgCGcGGGGCCGgGAgCCCGc -3'
miRNA:   3'- ucuCCUCGa--GC-CCCUGGCgCUgGGGC- -5'
21402 5' -63.6 NC_004812.1 + 209 0.68 0.503765
Target:  5'- gGGAGG-GCcCGGGucgcgcagccccGGCCcccGCGGCCCCGc -3'
miRNA:   3'- -UCUCCuCGaGCCC------------CUGG---CGCUGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 673 0.69 0.400536
Target:  5'- cGGGcGGCgcgaGGGGAgCGCGuCCCCGg -3'
miRNA:   3'- uCUCcUCGag--CCCCUgGCGCuGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 743 0.66 0.61691
Target:  5'- -cGGGGGU--GGGGGCggCGCGACCCUc -3'
miRNA:   3'- ucUCCUCGagCCCCUG--GCGCUGGGGc -5'
21402 5' -63.6 NC_004812.1 + 1002 0.66 0.606327
Target:  5'- -uAGGccugcccGGC-CGGGG-CCGCGcCCCCGc -3'
miRNA:   3'- ucUCC-------UCGaGCCCCuGGCGCuGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 1216 0.66 0.577593
Target:  5'- cGGGGGcGGCgccgCGGGGGCUccuccccgcccggGCGGCgCCGc -3'
miRNA:   3'- -UCUCC-UCGa---GCCCCUGG-------------CGCUGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 1434 0.73 0.244334
Target:  5'- gGGAGGGGC-CGGGG-CCGCGAgggCCGg -3'
miRNA:   3'- -UCUCCUCGaGCCCCuGGCGCUgg-GGC- -5'
21402 5' -63.6 NC_004812.1 + 2053 0.7 0.384674
Target:  5'- cGGGGGGCgCGGGGGagggggCGCGcCCCCc -3'
miRNA:   3'- uCUCCUCGaGCCCCUg-----GCGCuGGGGc -5'
21402 5' -63.6 NC_004812.1 + 2344 0.73 0.233452
Target:  5'- --cGGAGgaCGGGGGgCGCGuCCCCGc -3'
miRNA:   3'- ucuCCUCgaGCCCCUgGCGCuGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 3117 0.69 0.450531
Target:  5'- gGGAgGGAGUggUGGGGAgggugUCGCGGCCgCCGc -3'
miRNA:   3'- -UCU-CCUCGa-GCCCCU-----GGCGCUGG-GGC- -5'
21402 5' -63.6 NC_004812.1 + 3328 0.79 0.09595
Target:  5'- gGGAGGGGCcCGaGGGGCCGCcgcGCCCCGc -3'
miRNA:   3'- -UCUCCUCGaGC-CCCUGGCGc--UGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 3503 0.72 0.298568
Target:  5'- cGGGcgcGGGCcCGGGGcCgGCGGCCCCGg -3'
miRNA:   3'- uCUC---CUCGaGCCCCuGgCGCUGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 3530 0.68 0.459193
Target:  5'- -nGGGGGC---GGGGCCGCGGCgCCGg -3'
miRNA:   3'- ucUCCUCGagcCCCUGGCGCUGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 3611 0.71 0.314523
Target:  5'- cGAGGAGCUcuugcgcuugcgcgcCGGcGGGCgCGCGGCgCCGc -3'
miRNA:   3'- uCUCCUCGA---------------GCC-CCUG-GCGCUGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 4224 0.7 0.384674
Target:  5'- cGucGGGCUCGGGGGCgGCGGCggCGg -3'
miRNA:   3'- uCucCUCGAGCCCCUGgCGCUGggGC- -5'
21402 5' -63.6 NC_004812.1 + 4347 0.67 0.544471
Target:  5'- cGuGGuGCUCGuGGGGCgCGCGugcaacauggcgcgcGCCCUGg -3'
miRNA:   3'- uCuCCuCGAGC-CCCUG-GCGC---------------UGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 4630 0.66 0.597684
Target:  5'- -uAGGGGCg-GGGGGgCGgGACgCCCGc -3'
miRNA:   3'- ucUCCUCGagCCCCUgGCgCUG-GGGC- -5'
21402 5' -63.6 NC_004812.1 + 4659 0.68 0.485697
Target:  5'- gGGAGGGGCUCGccGGCCGuCGcGCgCCGg -3'
miRNA:   3'- -UCUCCUCGAGCccCUGGC-GC-UGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 4800 0.72 0.273384
Target:  5'- cGAGGgcuggugcgGGCgCGGGGucgGCaCGCGGCCCCGa -3'
miRNA:   3'- uCUCC---------UCGaGCCCC---UG-GCGCUGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 4852 0.73 0.238841
Target:  5'- --cGGGGC-CGGGGagggGCCGCGGCCCgCGc -3'
miRNA:   3'- ucuCCUCGaGCCCC----UGGCGCUGGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.